Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o07
         (622 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   1.9  
CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein ...    24   4.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   5.9  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   5.9  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 228 PTTKLYIDGQYVDS---KTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 392
           P  K  ID  +V     +TT W  L +   ++ IG +    +++  S  D AK+ +KT
Sbjct: 169 PERKSAIDLTFVSQSLMETTGWEVLPDYMNSDHIGILITIGKEQTPSPRDNAKKGWKT 226


>CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein
           protein.
          Length = 227

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 340 VASGTLPITSLVAGLVSSIQLVVFESTYCPSI 245
           +AS + P+ + +AG V+ +QL++      PS+
Sbjct: 1   MASFSSPLVATIAGTVAIVQLLLLTVLLHPSV 32


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 11/55 (20%), Positives = 22/55 (40%)
 Frame = +3

Query: 252 GQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLT 416
           GQY++ +   W  +   A    +     +TQ++  +     KR +      T+ T
Sbjct: 547 GQYIEVRNKKWSGIVETALGGCLSAFFVSTQEDWRTLDALLKREFPDLQNRTIFT 601


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 327 VPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKIT 488
           + EATQ     A       Y  W K  +   +Q+   F  +L E+  KL   IT
Sbjct: 463 IREATQYTRNGAAPGPDFVYNFWYKKLITIHEQIAACFNTVL-EDSRKLPKFIT 515


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,718
Number of Sequences: 2352
Number of extensions: 10959
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)