Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o07
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogena... 132 2e-31
At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phospha... 73 2e-13
At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phospha... 73 2e-13
At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase (S... 71 8e-13
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ... 61 7e-10
At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putativ... 60 2e-09
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic... 59 2e-09
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 58 4e-09
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 56 1e-08
At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative / anti... 48 5e-06
At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative / anti... 48 5e-06
At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putativ... 47 9e-06
At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putativ... 47 9e-06
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 31 0.47
At4g39560.2 68417.m05594 kelch repeat-containing F-box family pr... 30 1.4
At4g39560.1 68417.m05593 kelch repeat-containing F-box family pr... 30 1.4
At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putat... 29 2.5
At4g19330.1 68417.m02848 kelch repeat-containing F-box family pr... 29 3.3
At3g25750.1 68416.m03206 F-box family protein contains F-box dom... 28 4.3
At4g19250.1 68417.m02839 kelch repeat-containing protein contain... 27 7.6
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 27 7.6
At1g32180.1 68414.m03958 cellulose synthase family protein simil... 27 7.6
>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase,
putative similar to methylmalonate-semialdehyde
dehydrogenase [acylating], mitochondrial precursor
(MMSDH) [Rattus norvegicus] SWISS-PROT:Q02253
Length = 607
Score = 132 bits (319), Expect = 2e-31
Identities = 55/131 (41%), Positives = 90/131 (68%)
Frame = +3
Query: 228 PTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKST 407
P I G +V+S+++++I++ NPAT EV+ +VP T +E +A+ AAK+A+ W +
Sbjct: 112 PRVPNLIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTP 171
Query: 408 VLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLG 587
+ TRQ++M KF L+R+N KLA IT EQGKT+ D+ GD+ RG++ VEH C + +LQ+G
Sbjct: 172 ITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMG 231
Query: 588 DSIQNIAXDMD 620
+ + N++ +D
Sbjct: 232 EYLPNVSNGVD 242
>At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/108 (29%), Positives = 63/108 (58%)
Frame = +3
Query: 237 KLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLT 416
K Y DG++ S + + + NPAT + +V TQ+E+ + ++ AK A K+W+K+ +
Sbjct: 17 KYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSAQKSWAKTPLWK 76
Query: 417 RQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHC 560
R +L+ K A +L++N++ +A + +E K D+ +V+R + +C
Sbjct: 77 RAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYC 124
>At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/108 (29%), Positives = 63/108 (58%)
Frame = +3
Query: 237 KLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLT 416
K Y DG++ S + + + NPAT + +V TQ+E+ + ++ AK A K+W+K+ +
Sbjct: 17 KYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSAQKSWAKTPLWK 76
Query: 417 RQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHC 560
R +L+ K A +L++N++ +A + +E K D+ +V+R + +C
Sbjct: 77 RAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYC 124
>At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase
(SSADH1) similar to succinate-semialdehyde dehydrogenase
[NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526;
identical to succinic semialdehyde dehydrogenase mRNA,
nuclear gene encoding mitochondrial protein GI:6684441;
contains TIGRfam profile TIGR01780:succinic semialdehyde
dehydrogenase; contains Pfam profile PF00171: aldehyde
dehydrogenase (NAD) family protein
Length = 528
Score = 70.5 bits (165), Expect = 8e-13
Identities = 42/149 (28%), Positives = 76/149 (51%)
Frame = +3
Query: 150 IMASAILKLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRV 329
++ S+ + + ++Q V + SS T+ I G+++DS I++ NPAT E+I V
Sbjct: 25 LLVSSQCRQMSMDAQSVSEKLRSSGLLRTQGLIGGKWLDSYDNKTIKVNNPATGEIIADV 84
Query: 330 PEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTI 509
E A+ ++ A+ +WS+ T R +++ ++ LL ++ +L IT EQGK +
Sbjct: 85 ACMGTKETNDAIASSYEAFTSWSRLTAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPL 144
Query: 510 ADAEGDVLRGIQSVEHCCSITSLQLGDSI 596
+A G+V G +E+ GD I
Sbjct: 145 KEAIGEVAYGASFIEYYAEEAKRVYGDII 173
>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
identical to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
dehydrogenase [Amaranthus hypochondriacus] GI:2388710
Length = 501
Score = 60.9 bits (141), Expect = 7e-10
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Frame = +3
Query: 228 PTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAY-----KT 392
PT +L+IDG++ + I + NPAT EVIG +P AT +++ A++AA+RA K
Sbjct: 6 PTRQLFIDGEWREPILKKRIPIVNPATEEVIGDIPAATTEDVDVAVNAARRALSRNKGKD 65
Query: 393 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 530
W+K+ R + + A + E ++ LA + GK + +A D+
Sbjct: 66 WAKAPGAVRAKYLRAIAAKVNERKTDLAKLEALDCGKPLDEAVWDM 111
>At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795
Length = 503
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Frame = +3
Query: 222 SAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAY----- 386
+ P +L+I GQ+ + + + NPAT ++IG +P AT +++ A++AA++A+
Sbjct: 4 TVPRRQLFIGGQWTEPVLRKTLPVVNPATEDIIGYIPAATSEDVELAVEAARKAFTRNNG 63
Query: 387 KTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 530
K W+++T R + + A + E +S+LA + GK + +A D+
Sbjct: 64 KDWARATGAVRAKYLRAIAAKVIERKSELANLEAIDCGKPLDEAAWDM 111
>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
gi|20530143|gb|AAM27004
Length = 501
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +3
Query: 234 TKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 407
TKL+I+GQ++D+ + E +P EVI + E ++++ A++AA+ A+ W + T
Sbjct: 20 TKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHGPWPRMT 79
Query: 408 VLTRQQLMFKFARLLRENQSKLAAKITEEQGK 503
R +L+ KFA L+ EN +LA + GK
Sbjct: 80 GFERAKLINKFADLIEENIEELAKLDAVDGGK 111
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +3
Query: 234 TKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 407
T+L I G++VD+ + +P EVI +V E +++ A+ AA++A+ W K T
Sbjct: 54 TQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMT 113
Query: 408 VLTRQQLMFKFARLLRENQSKLAAKITEEQGK 503
R +++F+FA L+ ++ ++AA T + GK
Sbjct: 114 AYERSKILFRFADLIEKHNDEIAALETWDNGK 145
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +3
Query: 234 TKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 407
T+L I+G +VDS + +P T EVI V E +++ A+ AA+ A+ W K +
Sbjct: 58 TQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMS 117
Query: 408 VLTRQQLMFKFARLLRENQSKLAAKITEEQGK 503
R +++ +FA L+ ++ +LA+ T + GK
Sbjct: 118 AYERSRVLLRFADLVEKHSEELASLETWDNGK 149
>At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative /
antiquitin, putative strong similarity to SP|Q41247
Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
(Antiquitin 1) (Brassica
turgor-responsive/drought-induced gene 26 protein)
(Btg-26) {Brassica napus}; similar to turgor-responsive
protein 26G (aldehyde dehydrogenase family 7 member A1)
[Pisum sativum] SWISS-PROT:P25795
Length = 508
Score = 48.0 bits (109), Expect = 5e-06
Identities = 29/104 (27%), Positives = 48/104 (46%)
Frame = +3
Query: 285 IELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQ 464
+ NPA N+ I +V EA+ ++ L A + A K W + T R ++ + LR
Sbjct: 36 VSTLNPANNQPIAQVVEASLEDYEQGLKACEEAAKIWMQVTAPKRGDIVRQIGDALRSKL 95
Query: 465 SKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSI 596
L ++ E GK +A+ G+V I + + S QL S+
Sbjct: 96 DYLGRLLSLEMGKILAEGIGEVQEVIDMCDFAVGL-SRQLNGSV 138
>At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative /
antiquitin, putative strong similarity to SP|Q41247
Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
(Antiquitin 1) (Brassica
turgor-responsive/drought-induced gene 26 protein)
(Btg-26) {Brassica napus}; similar to turgor-responsive
protein 26G (aldehyde dehydrogenase family 7 member A1)
[Pisum sativum] SWISS-PROT:P25795
Length = 508
Score = 48.0 bits (109), Expect = 5e-06
Identities = 29/104 (27%), Positives = 48/104 (46%)
Frame = +3
Query: 285 IELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQ 464
+ NPA N+ I +V EA+ ++ L A + A K W + T R ++ + LR
Sbjct: 36 VSTLNPANNQPIAQVVEASLEDYEQGLKACEEAAKIWMQVTAPKRGDIVRQIGDALRSKL 95
Query: 465 SKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSI 596
L ++ E GK +A+ G+V I + + S QL S+
Sbjct: 96 DYLGRLLSLEMGKILAEGIGEVQEVIDMCDFAVGL-SRQLNGSV 138
>At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 596
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +3
Query: 240 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 419
+YI + ++ ++ PAT + +G P + E+ + +++A KTW++S+ R
Sbjct: 51 IYIPPRGRSQQSDKKVQCYEPATMKYLGYFPALSPTEVEERVTLSRKAQKTWAQSSFKLR 110
Query: 420 QQLMFKFARLLRENQSKLAAKITEEQGKTIADAE-GDVLRGIQSV 551
+Q + + + E+Q + + + GKT+ DA G+++ + +
Sbjct: 111 RQFLRILLKYIIEHQELICEVSSRDTGKTMVDASLGEIMTTCEKI 155
>At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 554
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +3
Query: 240 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 419
+YI + ++ ++ PAT + +G P + E+ + +++A KTW++S+ R
Sbjct: 51 IYIPPRGRSQQSDKKVQCYEPATMKYLGYFPALSPTEVEERVTLSRKAQKTWAQSSFKLR 110
Query: 420 QQLMFKFARLLRENQSKLAAKITEEQGKTIADAE-GDVLRGIQSV 551
+Q + + + E+Q + + + GKT+ DA G+++ + +
Sbjct: 111 RQFLRILLKYIIEHQELICEVSSRDTGKTMVDASLGEIMTTCEKI 155
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 31.5 bits (68), Expect = 0.47
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Frame = +3
Query: 138 SIN*IMASAILKLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPATNEV 317
S+N + SA+ + S + SY + P+ + ++ + KT+ N TNE+
Sbjct: 148 SVNPDIDSAVSTKIPEHSPVSAVSSYLRTEPSLQ-FVQHDFWQPKTS--CGTINCFTNEL 204
Query: 318 IGRVPEATQDELTSA---LDAAKRAYKTWS---KSTVLTRQQLMFKFARLLRENQSK--- 470
+ T DE TSA ++R T + KS+ + + M LR+ + +
Sbjct: 205 L------TSDEKTSASLSTVCSQRVLNTLTEALKSSGVNMSETMISVQLSLRKREDREYS 258
Query: 471 LAAKITEEQGKTIADAEGD 527
+AA +E+ G +IAD EGD
Sbjct: 259 VAAFASEDNGNSIADEEGD 277
>At4g39560.2 68417.m05594 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif; contains Prosite PS00018:
EF-hand calcium-binding domain
Length = 266
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 189 SQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIEL 293
+ LV R S++++ K+Y+ G DS ++NW+E+
Sbjct: 161 NMLVERNSHAANVIDGKIYVAGGSRDSNSSNWMEV 195
>At4g39560.1 68417.m05593 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif; contains Prosite PS00018:
EF-hand calcium-binding domain
Length = 266
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 189 SQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIEL 293
+ LV R S++++ K+Y+ G DS ++NW+E+
Sbjct: 161 NMLVERNSHAANVIDGKIYVAGGSRDSNSSNWMEV 195
>At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putative
similar to cytokinesis-related Sec1 protein KEULE
[Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
Pfam domain, PF00995: Sec1 family; non-consensus GC
donor splice site at exon boundary 46833
Length = 676
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -2
Query: 321 QLLH*LLGWSAQSNW*FLNLHIVHQYTALWLEQSCYMSDAVRAGIQI---LITLRSPMP 154
+LLH +LG + + + I+ + T + QSC M+D GI + L R PMP
Sbjct: 28 RLLHEMLGSTKTGDSKAWKILIMDRVTVKVMSQSCKMADITDQGISLVEELFKRREPMP 86
>At4g19330.1 68417.m02848 kelch repeat-containing F-box family
protein very low similarity to SKP1 interacting partner
6 [Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 537
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 171 KLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPAT 308
K K+ S +V R++ + KLY+ G ++T+W E+ +P T
Sbjct: 316 KQRKAPSMMVARKNAFTCVLDGKLYVMGGCEADESTHWAEVFDPKT 361
>At3g25750.1 68416.m03206 F-box family protein contains F-box domain
Pfam:PF00646
Length = 348
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 387 KTWSKSTVLTRQQLMFKFARLLRENQSKLAAKIT 488
K+W + +++++L F+F R L + K+ A ++
Sbjct: 35 KSWRSAVAMSKERLQFRFERYLPTSNKKIKAHLS 68
>At4g19250.1 68417.m02839 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 228
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 171 KLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPAT 308
K K+ S +V R + + KLY+ G ++T+W E+ +P T
Sbjct: 16 KQRKAPSMMVARTNAFTCVLDGKLYVMGGCEADESTHWAEVFDPKT 61
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 27.5 bits (58), Expect = 7.6
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = -2
Query: 387 YRPSWLHPKRKSIHPELPLAPCQLLH*LLGWSAQSNW*FLNLH--IVHQYTA--LWLEQS 220
+R + PKR + P+ LH +L W+ S FL+ H I + Y WLE+
Sbjct: 800 WRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERF 859
Query: 219 CYMSDAVRAGIQILITLRSPMP*FNLL 139
Y++ V + + + +P LL
Sbjct: 860 SYINSVVYPWTSLPLLVYCSLPAICLL 886
>At1g32180.1 68414.m03958 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-9
(gi:9622890) from Zea mays
Length = 979
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 356 SQFILS-CLWHPANYFISCWVGQLNPIGSF*IYILSINIQLCG 231
S FIL+ C P + F +V + GSF IY+L I + LCG
Sbjct: 764 SIFILTYCFLPPLSLFSGHFVVE-TLTGSFLIYLLIITLSLCG 805
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,582
Number of Sequences: 28952
Number of extensions: 240865
Number of successful extensions: 688
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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