BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10o06 (573 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 161 7e-41 SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 73 2e-14 SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 54 1e-08 SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 43 4e-05 SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 30 0.21 SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 28 1.1 SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 1.5 SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 2.0 SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 4.5 SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.0 SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.0 SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 7.9 SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 25 7.9 >SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex beta subunit Qcr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 457 Score = 161 bits (391), Expect = 7e-41 Identities = 83/134 (61%), Positives = 97/134 (72%), Gaps = 1/134 (0%) Frame = +2 Query: 173 ALVNVPPTKLTVLDNGLRIATEDSG-AATATVGLWIDAGSRYETSKNNGVAHFLEHMAFK 349 A +P T+ T L NGL +ATE A TATV + +DAGSR ET+KNNG AHFLEH+AFK Sbjct: 15 ATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFK 74 Query: 350 GTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEP 529 GT RSQ LEL EN GAHLNAYTSREQTV+YA N VP AV +LADI+ NSS++ Sbjct: 75 GTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISAS 134 Query: 530 EIERERGVILREMQ 571 +ERER VILRE + Sbjct: 135 AVERERQVILREQE 148 >SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase complex alpha subunit Mas2|Schizosaccharomyces pombe|chr 2|||Manual Length = 494 Score = 73.3 bits (172), Expect = 2e-14 Identities = 35/119 (29%), Positives = 66/119 (55%) Frame = +2 Query: 209 LDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELL 388 L NG+ + + +G+++ AGSRYET K +GV+HF++ +AF+ T + +++ Sbjct: 51 LKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAK 110 Query: 389 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILRE 565 +EN+G + TSRE ++ A +DV ++LA+ + + E ++ R I+ E Sbjct: 111 LENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYE 169 >SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual Length = 426 Score = 54.0 bits (124), Expect = 1e-08 Identities = 31/109 (28%), Positives = 55/109 (50%) Frame = +2 Query: 218 GLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVEN 397 G+ A ++ AT ++ + I+AGSRY+ GV+H LE AFK T +RS + E Sbjct: 30 GVSFAGRETPTATGSLSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESEL 87 Query: 398 MGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE 544 +G L+ +RE + A+ L + +LA+++ + ++ E Sbjct: 88 LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEE 136 >SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 42.7 bits (96), Expect = 4e-05 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Frame = +2 Query: 197 KLTVLDNGLRIA-TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 370 +L L+N L + D A+ + + GS+ + G+AHF EH+ F GT K + Sbjct: 25 RLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDE 84 Query: 371 TDLELLVENMGAHLNAYTSREQTVFY 448 + +E+ NAYT+ T +Y Sbjct: 85 NEYRKYLESHNGISNAYTASNNTNYY 110 >SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pombe|chr 2|||Manual Length = 992 Score = 30.3 bits (65), Expect = 0.21 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +2 Query: 284 GSRYETSKNNGVAHFLEHMAFKGTSKRSQTD--LELLVENMGAHLNAYTSREQTVFYAKC 457 G + + G+ H LEH G++K D ++L ++ +NA+T+ + T FY Sbjct: 78 GFQTPAENDEGIPHILEHTTLCGSNKYPVRDPFFKMLNRSLATFMNAFTASDFT-FYPFA 136 Query: 458 LAN 466 N Sbjct: 137 TVN 139 >SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 1006 Score = 27.9 bits (59), Expect = 1.1 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 556 NDTAFSFDFGFGEGGILYDISKDLYCYG 473 N F +F G+ G+ YDI + L YG Sbjct: 641 NRNIFHIEFDLGDSGLTYDIGEALGVYG 668 >SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 547 Score = 27.5 bits (58), Expect = 1.5 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +2 Query: 320 AHFLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAV-EILA 496 A+F + +G+ S T L V N + ++ RE+ VF + PV++ + + Sbjct: 430 AYFSKSRYVEGSGSMSTTPLATSVNNSYKLPSGFSVREEAVFSSPTTEGSRPVSLARLKS 489 Query: 497 DIIQNSSLAEPE 532 + I S A PE Sbjct: 490 EPIFRSDTASPE 501 >SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schizosaccharomyces pombe|chr 2|||Manual Length = 470 Score = 27.1 bits (57), Expect = 2.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 399 WVHT*TPTRPGNKQFFTQNASLMTSP 476 W H TPT P + Q T N+SL P Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386 >SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 434 Score = 25.8 bits (54), Expect = 4.5 Identities = 23/107 (21%), Positives = 43/107 (40%) Frame = +2 Query: 233 TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHL 412 T+ SG +GLW+ Y+ SK + + F+ + LEL + M Sbjct: 280 TQGSGIFLTAIGLWL-----YDRSKKGNLYESCKVKEFEKDA------LELEEQTMEDEK 328 Query: 413 NAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGV 553 + +S Q+ FY K + ++ + +I +S + + GV Sbjct: 329 SYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGV 375 >SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1260 Score = 25.4 bits (53), Expect = 6.0 Identities = 10/36 (27%), Positives = 20/36 (55%) Frame = -3 Query: 334 FKEMSDTIVLGGFIAGASVDPESYSGSGGSRIFSSN 227 F+ + + + G +I +D ++ + GGSR+F N Sbjct: 328 FEHIYEANIFGLYIQSPQLDIQTVAAGGGSRLFWRN 363 >SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 963 Score = 25.4 bits (53), Expect = 6.0 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -1 Query: 285 PASIQSPTVAVAAPESSVAIRKPLSSTVS 199 P+S++ P P S ++ + P S+TVS Sbjct: 189 PSSLEKPAGTGDLPSSEISTKAPASTTVS 217 >SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 393 Score = 25.0 bits (52), Expect = 7.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 508 LYDISKDLYCYGDVISEAFCVKNC 437 LY +S L+ +GD SEAF + C Sbjct: 235 LYILSSYLFQFGDQFSEAFLLDVC 258 >SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 174 Score = 25.0 bits (52), Expect = 7.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 485 EILADIIQNSSLAEPEIERER 547 +I D+I NSS + EIER R Sbjct: 7 QIFEDLISNSSFSNEEIERIR 27 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,361,385 Number of Sequences: 5004 Number of extensions: 48326 Number of successful extensions: 131 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 129 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 244081442 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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