Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o06
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...   161   7e-41
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    73   2e-14
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    54   1e-08
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    43   4e-05
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    30   0.21 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    28   1.1  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   1.5  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   2.0  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   4.5  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   6.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   6.0  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   7.9  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   7.9  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score =  161 bits (391), Expect = 7e-41
 Identities = 83/134 (61%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
 Frame = +2

Query: 173 ALVNVPPTKLTVLDNGLRIATEDSG-AATATVGLWIDAGSRYETSKNNGVAHFLEHMAFK 349
           A   +P T+ T L NGL +ATE    A TATV + +DAGSR ET+KNNG AHFLEH+AFK
Sbjct: 15  ATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFK 74

Query: 350 GTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEP 529
           GT  RSQ  LEL  EN GAHLNAYTSREQTV+YA    N VP AV +LADI+ NSS++  
Sbjct: 75  GTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISAS 134

Query: 530 EIERERGVILREMQ 571
            +ERER VILRE +
Sbjct: 135 AVERERQVILREQE 148


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 35/119 (29%), Positives = 66/119 (55%)
 Frame = +2

Query: 209 LDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELL 388
           L NG+    +      + +G+++ AGSRYET K +GV+HF++ +AF+ T +    +++  
Sbjct: 51  LKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAK 110

Query: 389 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILRE 565
           +EN+G +    TSRE  ++ A    +DV    ++LA+ +    + E ++   R  I+ E
Sbjct: 111 LENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYE 169


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 31/109 (28%), Positives = 55/109 (50%)
 Frame = +2

Query: 218 GLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVEN 397
           G+  A  ++  AT ++ + I+AGSRY+     GV+H LE  AFK T +RS   +    E 
Sbjct: 30  GVSFAGRETPTATGSLSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESEL 87

Query: 398 MGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE 544
           +G  L+   +RE  +  A+ L   +     +LA+++  +     ++  E
Sbjct: 88  LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEE 136


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +2

Query: 197 KLTVLDNGLRIA-TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 370
           +L  L+N L +    D     A+  + +  GS+    +  G+AHF EH+ F GT K   +
Sbjct: 25  RLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDE 84

Query: 371 TDLELLVENMGAHLNAYTSREQTVFY 448
            +    +E+     NAYT+   T +Y
Sbjct: 85  NEYRKYLESHNGISNAYTASNNTNYY 110


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 284 GSRYETSKNNGVAHFLEHMAFKGTSKRSQTD--LELLVENMGAHLNAYTSREQTVFYAKC 457
           G +     + G+ H LEH    G++K    D   ++L  ++   +NA+T+ + T FY   
Sbjct: 78  GFQTPAENDEGIPHILEHTTLCGSNKYPVRDPFFKMLNRSLATFMNAFTASDFT-FYPFA 136

Query: 458 LAN 466
             N
Sbjct: 137 TVN 139


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 556 NDTAFSFDFGFGEGGILYDISKDLYCYG 473
           N   F  +F  G+ G+ YDI + L  YG
Sbjct: 641 NRNIFHIEFDLGDSGLTYDIGEALGVYG 668


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 320 AHFLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAV-EILA 496
           A+F +    +G+   S T L   V N     + ++ RE+ VF +       PV++  + +
Sbjct: 430 AYFSKSRYVEGSGSMSTTPLATSVNNSYKLPSGFSVREEAVFSSPTTEGSRPVSLARLKS 489

Query: 497 DIIQNSSLAEPE 532
           + I  S  A PE
Sbjct: 490 EPIFRSDTASPE 501


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 399 WVHT*TPTRPGNKQFFTQNASLMTSP 476
           W H  TPT P + Q  T N+SL   P
Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 23/107 (21%), Positives = 43/107 (40%)
 Frame = +2

Query: 233 TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHL 412
           T+ SG     +GLW+     Y+ SK   +    +   F+  +      LEL  + M    
Sbjct: 280 TQGSGIFLTAIGLWL-----YDRSKKGNLYESCKVKEFEKDA------LELEEQTMEDEK 328

Query: 413 NAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGV 553
           +  +S  Q+ FY K     +   ++ +  +I +S +    +    GV
Sbjct: 329 SYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGV 375


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 334 FKEMSDTIVLGGFIAGASVDPESYSGSGGSRIFSSN 227
           F+ + +  + G +I    +D ++ +  GGSR+F  N
Sbjct: 328 FEHIYEANIFGLYIQSPQLDIQTVAAGGGSRLFWRN 363


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 285 PASIQSPTVAVAAPESSVAIRKPLSSTVS 199
           P+S++ P      P S ++ + P S+TVS
Sbjct: 189 PSSLEKPAGTGDLPSSEISTKAPASTTVS 217


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 508 LYDISKDLYCYGDVISEAFCVKNC 437
           LY +S  L+ +GD  SEAF +  C
Sbjct: 235 LYILSSYLFQFGDQFSEAFLLDVC 258


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 485 EILADIIQNSSLAEPEIERER 547
           +I  D+I NSS +  EIER R
Sbjct: 7   QIFEDLISNSSFSNEEIERIR 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,385
Number of Sequences: 5004
Number of extensions: 48326
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)