Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o06
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 177 NACLYAAAVANVRT*LPWLEITLKVVATFN 88
           NA   AA    V    PW+ +TL V+A  N
Sbjct: 47  NATACAALYERVEWSGPWILVTLIVLAIVN 76


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 28  LRKSARKKYFNS*YKDHNKNVESSNH 105
           +R+ +R+K +   Y   N +V  +NH
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANH 286


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 32   VNRQGKNILTHSIKITTKMLKVATTLRVI-SSQGNQVRTLATAAAYKQALVNVPPTKLTV 208
            +NRQGK ++    ++ ++    +   ++I S+Q  Q    A       A +   P  L  
Sbjct: 1150 LNRQGKQVIQTQYQVVSQAQTSSGQSKIIASTQQQQQSQQAQTVRMVTAQLAGKPIVLAS 1209

Query: 209  LDNGLRIATEDSGA 250
             +  + +   +SG+
Sbjct: 1210 GNKNVGVGVSNSGS 1223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,205
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)