Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o05
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868...    41   0.001
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081...    41   0.001
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    29   3.5  
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    28   6.2  
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743...    28   8.1  
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    28   8.1  

>10_08_0921 +
           21586034-21586229,21586464-21586576,21586768-21586875,
           21586967-21587205,21587301-21587399,21587448-21587535,
           21587617-21587750,21588274-21588362,21588718-21588751,
           21588830-21588898,21589216-21589339
          Length = 430

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 552 ADGVYPKALEGPENRRVTVWCANDYLGMSRHPTVQDAAVNAIKSYGTG 695
           A+G      E   + ++ ++  NDY+G+S HP ++ AAV A + YG G
Sbjct: 64  AEGGEGSGQEEKVDEKLILFSGNDYMGLSSHPAIRHAAVKAAEEYGMG 111


>01_06_0628 +
           30707353-30707548,30707846-30707958,30708090-30708197,
           30708305-30708543,30708774-30708861,30708942-30709075,
           30709285-30709498,30709671-30709759,30710194-30710262,
           30710560-30710683
          Length = 457

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 552 ADGVYPKALEGPENRRVTVWCANDYLGMSRHPTVQDAAVNAIKSYGTG 695
           A+G      E   + ++ ++  NDY+G+S HP ++ AAV A + YG G
Sbjct: 64  AEGGEATGQEEEVDEKLILFSGNDYMGLSSHPAIRKAAVKAAQEYGMG 111


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 342 SRGFRSLGNDETKCPFIQQNSIISEAPKEMTEDIAEPATPYH 467
           S+  R  G D  K      N I  E+ K + E I EP TPYH
Sbjct: 6   SKKSRDRGRDRVKWNEENLNDI--ESTKPVREKITEPKTPYH 45


>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 537 VSRLAADGVYPKALEGPENRRVTVWCANDYLGMSRHP---TVQDAAVNAIKSYGTG 695
           ++ +   G+YPK +   +  ++T++C    L    H     +  A    +KS+G G
Sbjct: 474 INDIQGQGLYPKVIYDIDTIKITIYCVYSELAAEVHKGRGRIPVADYKIVKSFGEG 529


>11_02_0020 +
           7429898-7430131,7432565-7432669,7434535-7434621,
           7435188-7435241,7435338-7435483,7435593-7435719,
           7436200-7436208
          Length = 253

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 455 RRFRDVLGHFLRSFRNDRVLLNEGAFGFVISQRTKSTRYNRAIISVLLHQG 303
           R   DV+  FL   + +R L    A  FV+  +       R +   +LHQG
Sbjct: 48  RPLEDVVADFLARIQPERRLRFGAAINFVLKDKMMLRPAERLVAFTILHQG 98


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 450 PATPYHYENFFHDQINAK 503
           PATP   E  +H+Q+NAK
Sbjct: 101 PATPCKNEEIYHEQVNAK 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,901,249
Number of Sequences: 37544
Number of extensions: 391533
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)