Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o05
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_53065| Best HMM Match : Ribosomal_L35p (HMM E-Value=8.2)            30   2.1  
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.8  
SB_45498| Best HMM Match : Herpes_BLRF2 (HMM E-Value=6.1)              29   4.8  
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)                 29   4.8  
SB_14571| Best HMM Match : LTXXQ (HMM E-Value=6.6)                     29   4.8  
SB_10746| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.8  
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_5732| Best HMM Match : LTXXQ (HMM E-Value=6.6)                      29   4.8  
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)                       29   4.8  
SB_22587| Best HMM Match : LTXXQ (HMM E-Value=6.6)                     29   4.8  
SB_15162| Best HMM Match : LTXXQ (HMM E-Value=6.6)                     29   4.8  
SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)                   29   4.8  
SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_38770| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  28   8.3  

>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 462 YHYENFFHDQINAKKRDYSYRVFRKVSRLAADGVYPKALEGPENR 596
           + YE FF  +I  KK D +YRVF+KV+RLA    + +   G  N+
Sbjct: 200 FEYEKFFEGEIQKKKADDTYRVFKKVNRLAKAFPHAQEFSGAANK 244



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 252 CPFLGSLNQAFVKNYGATLMKQYGNYCPIISR 347
           CPFL  +   F++    +++  Y   CP++S+
Sbjct: 76  CPFLARMPSTFIRKARESVLLSYAETCPVMSK 107


>SB_53065| Best HMM Match : Ribosomal_L35p (HMM E-Value=8.2)
          Length = 82

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 252 CPFLGSLNQAFVKNYGATLMKQYGNYCPIISR 347
           CPFL  +   F++    +++  Y   CP++S+
Sbjct: 21  CPFLARMPSTFIRKARESVLLSYAETCPVMSK 52


>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 492 INAKKRDYSYRVFRKVSRLAADGVYPKALEGPENRRVTVWCANDY 626
           +N K+ D   R F ++  +A DG +P    G +   +T+  +ND+
Sbjct: 192 VNTKRLDRETRDFYQLVIVAVDGGFPLPRSGRKEVNITILDSNDH 236


>SB_45498| Best HMM Match : Herpes_BLRF2 (HMM E-Value=6.1)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
          Length = 1283

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 35  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 68


>SB_14571| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 244

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_10746| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 336

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 492 INAKKRDYSYRVFRKVSRLAADGVYPKALEGPENRRVTVWCANDY 626
           +N K+ D   R F ++  +A DG +P    G +   +T+  +ND+
Sbjct: 192 VNTKRLDRETRDFYQLVIVAVDGGFPLPRSGRKEVNITILDSNDH 236


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 184 NFLELMLGQIANYCPIISRS--TLVKNSTSLEFIWQ 217


>SB_5732| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 369

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1586

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 577

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_22587| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 204

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_15162| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 401

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)
          Length = 619

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISRS--TLVKNSTSLEFIWQ 114


>SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 34  SSAKVRSNRYDDTNFINESRCQLSSQL 114
           SS   ++N Y+ T F+++ R QLSS+L
Sbjct: 22  SSPACKTNAYESTPFLSKIRSQLSSEL 48


>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 398
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 138 NFLELMLGQIANYCPIISR--NTLVKNSTSQEFIWQ 171


>SB_38770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 235 LCNR*HKTLMKLVEVGNNLFKDN*TLALTVAERSTVVCDRSTG 107
           LCN   + + + +++GN L  ++  L +  A  ST + +RSTG
Sbjct: 179 LCNEQGENIQEDIQLGNQLLAEDKELNIDTASEST-LSERSTG 220


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 626  VIIGTPDSYSTIFRPLQGFRIYSISSQTRHLSKNAIGVVPF 504
            V+IGTP S   +   L    ++S S+ TR+L+   + +V +
Sbjct: 963  VLIGTPQSVRNVCMCLTEEHMWSSSTMTRNLNHTTLPIVQY 1003


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,027,860
Number of Sequences: 59808
Number of extensions: 461325
Number of successful extensions: 1067
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)