Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o05
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...    37   0.016
U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    27   9.7  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    27   9.7  
AC024801-7|AAK95892.2|  606|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +3

Query: 591 NRRVTVWCANDYLGMSRHPTVQDAAVNAIKSYGTG 695
           ++ V  +CAN+YLG+S HP V  A   A++++G G
Sbjct: 66  DKPVINFCANNYLGLSSHPEVIAAGQKALETHGAG 100


>U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical
           protein C34G6.5 protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 428 FLRSFRNDRVLLNEGAFGFVISQRTKSTRYNRAIISV 318
           F R ++    ++ EG+FG VIS   ++T+  RAI ++
Sbjct: 23  FQRKYQLQENIIGEGSFGTVISATCRTTQEKRAIKAI 59


>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 240 RKMPCPFLGSLNQAFVKNYGATLMKQYGNYCPIISRGFRSL 362
           R+  C FLGS++Q    +  +  + +   +C  I+RG R L
Sbjct: 549 RRFSCEFLGSISQVHQLDLSSNQINEIDIFC--IARGIRKL 587


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
            protein R05D3.1 protein.
          Length = 1053

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 495  NAKKRDYSYRVFRKVSRLAADGVYPKALEGPENRRVT 605
            N+KK +Y Y +   VSRL +D +  K LE  ++RR T
Sbjct: 988  NSKKANYGYLLEMPVSRLTSDEM--KRLEERKSRRRT 1022


>AC024801-7|AAK95892.2|  606|Caenorhabditis elegans Hypothetical
           protein Y50D7A.2 protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 327 YCPIISRGFRSLGNDETKCPFIQQNSIISEA 419
           +CP      RSLG ++  CP+      I+ A
Sbjct: 21  FCPNFQEDLRSLGREKKICPYFTARQAINRA 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,583,403
Number of Sequences: 27780
Number of extensions: 352860
Number of successful extensions: 992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)