Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o05
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04620.2 68418.m00464 aminotransferase class I and II family ...    47   1e-05
At5g58140.4 68418.m07274 protein kinase family protein / non pho...    30   1.7  
At5g58140.3 68418.m07277 protein kinase family protein / non pho...    30   1.7  
At5g58140.2 68418.m07276 protein kinase family protein / non pho...    30   1.7  
At5g58140.1 68418.m07275 protein kinase family protein / non pho...    30   1.7  
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    28   5.1  
At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated memb...    27   9.0  
At1g32860.1 68414.m04049 glycosyl hydrolase family 17 protein si...    27   9.0  

>At5g04620.2 68418.m00464 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 476

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = +3

Query: 594 RRVTVWCANDYLGMSRHPTVQDAAVNAIKSYGTG 695
           +++ ++  NDYLG+S HPT+ +AA NA+K YG G
Sbjct: 102 KKLLLFSGNDYLGLSSHPTISNAAANAVKEYGMG 135


>At5g58140.4 68418.m07274 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 689

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 31  GSSAKVRSNRYDDTNFINESRCQLSSQLIGHRPQWNV 141
           GS  K  +NR++D   +      LS+++IG R  W++
Sbjct: 331 GSKLKSSNNRHEDLLRMEPEELMLSTEVIGQRDSWDL 367


>At5g58140.3 68418.m07277 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 915

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 31  GSSAKVRSNRYDDTNFINESRCQLSSQLIGHRPQWNV 141
           GS  K  +NR++D   +      LS+++IG R  W++
Sbjct: 331 GSKLKSSNNRHEDLLRMEPEELMLSTEVIGQRDSWDL 367


>At5g58140.2 68418.m07276 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 915

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 31  GSSAKVRSNRYDDTNFINESRCQLSSQLIGHRPQWNV 141
           GS  K  +NR++D   +      LS+++IG R  W++
Sbjct: 331 GSKLKSSNNRHEDLLRMEPEELMLSTEVIGQRDSWDL 367


>At5g58140.1 68418.m07275 protein kinase family protein / non
           phototropic hypocotyl 1-like protein (NPL1) contains
           Pfam domains, PF00069: Protein kinase domain and
           PF00785:  PAC motif; similar to SP:O48963 Nonphototropic
           hypocotyl protein 1           (Phototropin) [Mouse-ear
           cress] {Arabidopsis thaliana}; identical to cDNA non
           phototropic hypocotyl 1-like (NPL1) GI:5391441
          Length = 915

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 31  GSSAKVRSNRYDDTNFINESRCQLSSQLIGHRPQWNV 141
           GS  K  +NR++D   +      LS+++IG R  W++
Sbjct: 331 GSKLKSSNNRHEDLLRMEPEELMLSTEVIGQRDSWDL 367


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to RNA-dependent ATPase/helicase Cdc28p
           [Schizosaccharomyces pombe] GI:1439562; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, weak hit
           to PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1775

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 25  DCGSSAKVR---SNRYDDTNFINESRCQLSSQLIGHRPQWNVRLQ*EPTFSYP 174
           D G SA  R   S+    TN  N SR   SS  + HRP WN +    P  ++P
Sbjct: 9   DGGRSATDRRQQSSHSSSTNRYN-SRSAQSSPPLNHRPTWNQQHSQYPNSNFP 60


>At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated
           membrane protein 713 (VAMP713) identified as AtVAMP713
           by Sanderfoot, A.A., et al. in Plant Physiol. 124:
           1558-69 (2000); similar to Vesicle-associated membrane
           protein 722  (AtVAMP722) Synaptobrevin-related protein 1
           (SP:P47192) {Arabidopsis thaliana}; synaptobrevin-like
           protein Sybl1, Mus musculus, EMBL:MMU133536
          Length = 221

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 198 TSFISVLCHRLHK-NRKMPCPFLGSLNQAFVKNYGATL 308
           T  ++VLC       R +P  FL  ++Q FVK YG  +
Sbjct: 59  TDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAI 96


>At1g32860.1 68414.m04049 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 426

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 435 EDIAEPATPYHYENFFHDQINA 500
           + I +PAT +HY+N    QI+A
Sbjct: 226 QGIVDPATGFHYDNMLFAQIDA 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,737
Number of Sequences: 28952
Number of extensions: 327334
Number of successful extensions: 817
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)