Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o04
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.17 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.40 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   6.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 390  YNTVSNV-WRQLKAPGAPPPRSAHQA 464
            Y+T+    WRQ + P  PPP S+ QA
Sbjct: 1342 YSTLERTAWRQQQPPPPPPPPSSGQA 1367


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 201 KVIAEIEREEAKRYAASEKVLEKPPSSR----AYATLTPHPINNELVLFGGEYHNGQKTE 368
           K+I    R  +KR+++S      P SSR    +  T  PH  +N+       +H  Q TE
Sbjct: 15  KIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNK-EKSKNNHHCNQDTE 73

Query: 369 TYNDLFI 389
             N L I
Sbjct: 74  KLNQLEI 80


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 429 PGAPPPRSAHQAVSTPAN 482
           PGAPP ++  Q + +PA+
Sbjct: 52  PGAPPSQNPSQMMISPAS 69


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
 Frame = +3

Query: 231 AKRYAASEKVLEKPPSSRAYATLTPHPINNELVLFGG----EYHNGQKTETYNDLFIYNT 398
           AK   A ++     PS+ +        + +  ++ GG    +   G+     N   IYN 
Sbjct: 321 AKYRNAFKETCRCSPSNPSITRTGLSSVRDSSIICGGNKRSQVFRGRDANRQNSCNIYNA 380

Query: 399 VSNVWRQLKAPGAPPPRSAHQAVSTPAN 482
            S +   L+       R   +  S PAN
Sbjct: 381 SSRMENNLRGETQSNYREMEKRQSVPAN 408


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 228  EAKRYAASEKVLEKPPSSRAYATLTPHPI 314
            E +R   +E V E+PP      TLT   I
Sbjct: 1070 EERRQHTAEGVPEQPPHDTTCTTLTSQTI 1098


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 439 GAPGAFSCLQTLLTVLYI 386
           GA G FS L  L++ +YI
Sbjct: 83  GAVGVFSVLTILISYIYI 100


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   DNNNHNT*KSVS*NI*KFKLIYFSLKWVKR 90
           +NNN+N     + N   +K +Y+++ ++++
Sbjct: 97  NNNNYNNYNYNNNNYNNYKKLYYNINYIEQ 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,612
Number of Sequences: 438
Number of extensions: 4198
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)