Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o02
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    76   4e-15
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    43   5e-05
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    29   0.66 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    28   1.5  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.5  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   3.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   4.7  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   6.2  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   8.2  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 2/173 (1%)
 Frame = +2

Query: 140 EVEALDSIYFGDMAVIETKPFHKFSIPIKSEGFDDGEGLACHLVFTYTSKYPDELPIIEI 319
           E E L+SIY  +   I    F + + PI  E  +     +       +  YPDE+P ++I
Sbjct: 8   EREILESIYPEEFKCINDSTF-EITQPIDREESNCDNPPSLIFTCQLSEAYPDEVPDVKI 66

Query: 320 DNEENFDNIVDKE--ELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVKKEREERI 493
              E    + ++E   L   +A+  +E LGM M+F+L S  +E  N    +  +   + I
Sbjct: 67  TFSEPHPWLGEEEIERLKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQAI 126

Query: 494 LAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLT 652
             + + + E E K+F GT VTVESF  W+K F+       K E+E+K K  L+
Sbjct: 127 EERHRKEAEQENKKFHGTPVTVESFTEWKKGFDAWRNEQLKLEQESKLKEALS 179


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
 Frame = +2

Query: 131 QTSEVEALDSIYFGDMAVIETKPF------HKFSIPIKSEGFDDGEGLACHLVFTYTSKY 292
           Q +E+EAL +I+  D   ++ +        H + I + S   +        L       Y
Sbjct: 14  QENEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCIELGRSY 73

Query: 293 PDELPIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVK 472
           P   P+I++ N EN  N   +  LL  L  + K+ LG  M+F L S  Q++LN+    + 
Sbjct: 74  PYVKPVIKLQNGENVLNSQIRF-LLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQSDLS 132

Query: 473 KE----REERILAKQKADEEAEL 529
            +     EER +  +   E AE+
Sbjct: 133 SQFASLEEERAVQLKHDRERAEV 155


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
 Frame = +2

Query: 308 IIEIDNEENFDNIVDKEELL-THLAEQGKENLGMVMVF---TLVSAGQEWLNETWDKVK- 472
           ++E+DNEE+ D    +E L+ THL E  ++   +   +    L+S+G    +  + +V  
Sbjct: 323 VVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNP 382

Query: 473 --KEREERILAKQKADE-EAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKN 643
             K  EER L ++K  + EAE+K     +V  +      KQ E ++    +  + A +K 
Sbjct: 383 SAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRL--KQSENELRTRHREMKAALEKQ 440

Query: 644 K 646
           K
Sbjct: 441 K 441


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 461 DKVKKEREERI-LAKQKADEEAELKRFEGTRVTVES 565
           +K KKEREE++ L ++ AD++AE+   E +  T E+
Sbjct: 407 EKKKKEREEQVRLLQESADKDAEMN--EASTATSEN 440



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 548 RVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLTGRELFLQDTTLNESDLKFL 709
           R   E+ + W++   ++  +  K EREA D+ K   +E  L+++      L FL
Sbjct: 684 RAMRETMVFWKRNERVERDLRKKAEREALDRAK---KEEELRESRRQARKLDFL 734


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 369 HILLNRVKKTWEWSWYSH*CQLDKSGLMRLGIKLRKSVKK 488
           H+ +N+  +  +WS+Y+H  +  +  L+ +   LR + KK
Sbjct: 183 HLKVNKYTEPLDWSYYAHNLERIEDLLVEMEENLRPTKKK 222


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 389 KENLGMVMVFTLVSAGQEWLNETWDKVKKEREERIL--AKQKADEEAELKRFEGTRVTVE 562
           KE+L M    T  +A  E  +E ++  ++E  ER +  + + +DEEAELK+ E     VE
Sbjct: 27  KEHLRM----TQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVE 82

Query: 563 SFL 571
             L
Sbjct: 83  KIL 85


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 473 KEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLT 652
           K  EE++ A +K   + +LK  +   ++ ESF  + K+        A  +R  KD   + 
Sbjct: 771 KSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRAITTANGKRIFKDGRVIV 830

Query: 653 GREL 664
            ++L
Sbjct: 831 FQQL 834


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 533 FSVLPLHLPFVWLVSFLHALS 471
           FS + + LPF+ L+SFLH  S
Sbjct: 147 FSPIIITLPFIALISFLHLRS 167


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 470 KKEREERILA-KQKADEEAELKR 535
           +KERE++ L  KQ+ DE+ ELK+
Sbjct: 33  EKEREKKYLQEKQQKDEQRELKK 55


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 321 TMRRISTILLIKRNFSHILLNRVKKTWEW 407
           T+  ++ ++LI  N SH+     K  W W
Sbjct: 846 TLANLAPMMLITHNASHVPPRPSKSLWNW 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,363
Number of Sequences: 5004
Number of extensions: 60838
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)