Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o02
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0338 - 21121289-21121350,21121456-21121528,21121808-211218... 97 1e-20
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620... 39 0.005
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 32 0.029
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 32 0.52
01_06_1095 - 34484064-34484492,34484716-34485041,34485505-34485955 30 2.1
01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121 30 2.1
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524 29 2.8
11_04_0097 + 13448740-13450725 29 4.9
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 29 4.9
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 29 4.9
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 6.4
>01_05_0338 -
21121289-21121350,21121456-21121528,21121808-21121892,
21122031-21122122,21122479-21122607,21123253-21123310,
21123448-21123517,21123643-21123676,21123850-21123917,
21124057-21124261
Length = 291
Score = 97.1 bits (231), Expect = 1e-20
Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Frame = +2
Query: 116 DYNYEQTSEVEALDSIYFGDMAVIE--------TKPFHKFSIPIKSEGFDDGEGLACHL- 268
DY EQ EVEAL +I D+ I+ T + + + + FD+ + L
Sbjct: 47 DYEQEQEMEVEALQAILMDDIKEIDPSESGLSTTARCFQIVLSPQDDDFDESAYVPVQLA 106
Query: 269 -VFTYTSKYPDELPIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEW 445
+F +T KYPDE P++ + + + D L L ++ ENLGM MV+TLV++ Q+W
Sbjct: 107 LIFAHTEKYPDEPPLLNVKSVRGMKS-EDLASLKEKLEQEATENLGMAMVYTLVTSAQDW 165
Query: 446 LNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIP-AKRE 622
L+E + + + E +++ EE E+ G VTVESFLAWR +FE ++ + AK
Sbjct: 166 LSEKYGQNAGDGE----SEENEAEEEEVIVPHGEAVTVESFLAWRDRFEAELALQRAKLM 221
Query: 623 RE----AKDKNKLTGRELF 667
E A + KL+GR+ F
Sbjct: 222 PESALTAPKEKKLSGRQYF 240
>01_06_1254 +
35761046-35761162,35761332-35761416,35761877-35762017,
35762118-35762206,35762519-35762701,35763509-35763697,
35763808-35763938,35764023-35764125,35765123-35765308
Length = 407
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +2
Query: 464 KVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWR--KQFEIDMGIPAKREREAKD 637
K E E +A + E+ K T +T + F+ W+ K E + G+ A R AK+
Sbjct: 249 KALLEEESEKIAIEDEIEDQRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERAKN 308
Query: 638 KNKLTGRELFLQDTTLNESDLKFLD 712
++++GRELF+ D+++ D + D
Sbjct: 309 -DRMSGRELFMADSSVFVDDAEAYD 332
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 32.3 bits (70), Expect(2) = 0.029
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = +2
Query: 167 FGDMAVIETKPFHKFSIPIKSEGFDDGEGLACHLVFTYTSKYPDELPIIEIDNEENFDNI 346
F +M V P +P+K EG A L+++YT + + D+ E F+
Sbjct: 872 FEEMDVFRKMPQQPHFLPLKHHPLGLREGTALGLMWSYTDAVDNISKLCITDSMEIFE-- 929
Query: 347 VDKEELLTHLAEQGKENLGMVMVFT-LVSAGQEWLNETWD--KVKKEREERILAKQKAD 514
D + LT L E G + + T L+ ++ N D K+K++ ++ A + D
Sbjct: 930 -DHIKTLTILEENGFSVQSLQQILTKLLQIRSDYTNSLRDGEKLKEQIADKAFAVSRVD 987
Score = 22.6 bits (46), Expect(2) = 0.029
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 494 LAKQKADEEAELKRFEGTRVTVE 562
++K+K DE+AEL R + E
Sbjct: 1014 MSKKKEDEDAELSRLKAENNNAE 1036
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 461 DKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEID 598
+KVKK REER + K + +EE L E R + + ++F D
Sbjct: 170 EKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFD 215
>01_06_1095 - 34484064-34484492,34484716-34485041,34485505-34485955
Length = 401
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 326 EENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEW-LNETWDKVKKEREERILAK 502
EEN +N+ LL +E +E + + + QEW E + +K + +E++ +
Sbjct: 31 EENLENLEQPLPLLMPSSEDHREQQLVPVPWLQQDQDQEWHEQEQFLPLKNQNQEQLQDQ 90
Query: 503 QKADEEAELKRFEG 544
Q ++ E +R+ G
Sbjct: 91 QPLQDQEETRRYLG 104
>01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121
Length = 145
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +2
Query: 290 YPDELPIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKV 469
+ DE + + E + IVDK L H ++GKE MV + + ++ E +K
Sbjct: 33 FDDEKSTLTVIGEVDVVVIVDK---LRH-PKKGKEKREGYMVEVMAVSDEK--KEAEEKK 86
Query: 470 KKEREERILAKQKADEEAELKRFE 541
KK+ EE+ K+K EE E K+ E
Sbjct: 87 KKDEEEK-KKKEKEKEEEEKKKKE 109
>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
Length = 652
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +3
Query: 258 PAI*YLLTHQSILMNYPLLKLTMRRISTILLIKRNFSHILLNRVKKTWEW 407
P YLL + L KLTMRR + +L N S L K W W
Sbjct: 100 PPANYLLISGDRDFSNALHKLTMRRYNILLAQPPNVSQALTAAAKSVWLW 149
>11_04_0097 + 13448740-13450725
Length = 661
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 461 DKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEID 598
+ + KE EER A+ KA EEA + +R +E+ L +K+ E D
Sbjct: 581 EALAKEEEERKKAEAKAKEEAAAR---ASRAAIEAVLGRKKEGEND 623
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 549 ESQ*SHFWHGGNSLRLT-WESQLRGNEKQKIRTN*LEENYSFRIQHSM 689
ES SH H +S R W+ + G + ++ ++ EEN SFR Q SM
Sbjct: 257 ESHISHSKHETSSNRSNRWKYNIFGKKNKEDHSSRAEENKSFRKQKSM 304
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 527 LKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLTG 655
++ EGTR T S +A+ ++ E+ +G PAKR+ +N G
Sbjct: 57 IENSEGTRTT-PSVVAFNQKGELLVGTPAKRQAVTNPQNTFFG 98
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 437 QEWLNETWDKVKKEREERILAKQKADE----EAELKRFEGTRVTVESFLAWRKQFE 592
Q + + KV + + E I+ K+K E E E+K E + T ESF++W K+ E
Sbjct: 1480 QRTIKDVSAKVLQLKSE-IIDKEKGYEARLKELEIKMQEKEKDTAESFISWNKERE 1534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,153,362
Number of Sequences: 37544
Number of extensions: 336406
Number of successful extensions: 805
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -