Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o02
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51730.1 68414.m05829 RWD domain-containing protein contains ... 89 4e-18
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 39 0.004
At3g60300.1 68416.m06740 RWD domain-containing protein contains ... 38 0.007
At4g03180.1 68417.m00435 expressed protein 32 0.44
At1g03910.1 68414.m00376 expressed protein low similarity to cac... 31 0.76
At5g28080.1 68418.m03391 protein kinase family protein contains ... 30 1.8
At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family... 30 1.8
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.8
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.8
At1g66780.1 68414.m07591 MATE efflux family protein contains TIG... 30 1.8
At3g58210.1 68416.m06490 meprin and TRAF homology domain-contain... 29 2.3
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 29 2.3
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 29 3.1
At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative simil... 29 3.1
At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ... 29 3.1
At1g04650.1 68414.m00462 hypothetical protein 29 3.1
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 29 4.1
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 4.1
At5g28930.1 68418.m03578 hypothetical protein various predicted ... 28 5.4
At3g61390.2 68416.m06872 U-box domain-containing protein several... 28 5.4
At3g61390.1 68416.m06871 U-box domain-containing protein several... 28 5.4
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3... 28 5.4
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 28 5.4
At3g10570.1 68416.m01268 cytochrome P450, putative similar to cy... 28 5.4
At2g45920.1 68415.m05710 U-box domain-containing protein contain... 28 5.4
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 28 5.4
At3g58410.1 68416.m06510 meprin and TRAF homology domain-contain... 28 7.1
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2... 28 7.1
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2... 28 7.1
At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB... 28 7.1
At1g66760.2 68414.m07589 MATE efflux family protein contains TIG... 28 7.1
At1g66760.1 68414.m07588 MATE efflux family protein contains TIG... 28 7.1
At1g64820.1 68414.m07349 MATE efflux family protein similar to r... 28 7.1
At5g46590.1 68418.m05736 no apical meristem (NAM) family protein... 27 9.4
At5g14400.1 68418.m01682 cytochrome P450 family protein similar ... 27 9.4
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 27 9.4
>At1g51730.1 68414.m05829 RWD domain-containing protein contains
Pfam profile PF05773: RWD domain; similar to GCN2
eIF2alpha kinase (GI:6066585) [Mus musculus]; similar to
GCN2beta (GI:10764163) [Mus musculus]; similar to RING
finger protein 25 (RING finger protein AO7)
(Swiss-Prot:Q9QZR0) [Mus musculus]; similar to RING
finger protein 25 (Swiss-Prot:Q96BH1) [Homo sapiens]
Length = 252
Score = 88.6 bits (210), Expect = 4e-18
Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 16/200 (8%)
Frame = +2
Query: 116 DYNYEQTSEVEALDSIYFGDMAVIETKPF------HKFSIPIKSEGFDDGEGLACH---- 265
+Y EQ E+EAL++I + I + F I + + D+ E LA
Sbjct: 3 EYKQEQEMEIEALEAILMDEFKEIHSSESGLNTSNRCFQITVTPQD-DELEELAIPPVQL 61
Query: 266 -LVFTYTSKYPDELPIIEIDNEENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQE 442
LVF++T YPDE P++++ + ++ D L L ++ ENLGM M++TLVS+ ++
Sbjct: 62 ALVFSHTENYPDEAPLLDVKSIRGI-HVSDLTILKEKLEQEASENLGMAMIYTLVSSAKD 120
Query: 443 WLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIP-AKR 619
WL+E + + + A+ +A +E E+ G VT+E+FLAWR+++E ++ + AK
Sbjct: 121 WLSEHYG----QDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEAELALERAKL 176
Query: 620 ERE----AKDKNKLTGRELF 667
E A + KLTGR+ F
Sbjct: 177 MPESALTAPKEKKLTGRQWF 196
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 473 KEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQ--FEIDMGIPAKREREAKDKNK 646
+E + LA + E K T++T F+ W+++ E D G+ A + AK+ ++
Sbjct: 211 EEESSKKLAVEDEIENERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQAERAKN-DR 269
Query: 647 LTGRELFLQDTTLNESDLKFLDD 715
++GRELFL + +L D + ++
Sbjct: 270 MSGRELFLSNASLFVDDAEACEE 292
>At3g60300.1 68416.m06740 RWD domain-containing protein contains
weak similarity to RING finger protein 25 (RING finger
protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
Length = 366
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +2
Query: 128 EQTSEVEALDSIYFGDMAVIETKPFH-KFSIPIKSEGFDDGEGLACHLVFTYTSKYPDEL 304
E EVEAL+++Y D ++++ P H I ++ + + + F SKYPDE
Sbjct: 5 EVAMEVEALEAVYSEDCVILDSYPPHLHLHIKPRTAEISSQQFVEAVVRFQAGSKYPDEP 64
Query: 305 PIIEIDNEENFDNIVDKEELLTHLAEQGKENL 400
P I + + D +++LL + ++ L
Sbjct: 65 PRISLIESKGLDE--QRQKLLIGIVQEKASQL 94
>At4g03180.1 68417.m00435 expressed protein
Length = 185
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 452 ETWDKVKKEREERILAKQKADEEAELKRFE 541
E ++V+KERE AK++A EEAE +R E
Sbjct: 119 EEMERVRKEREAMFQAKKEAKEEAESRRKE 148
>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
[Drosophila melanogaster] GI:7673675; expression
supported by MPSS
Length = 672
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 461 DKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEID 598
+KVKK REER + K + +EE L E R + ++F D
Sbjct: 169 EKVKKRREERAVEKARHEEEMALLARERARAEFHDWEKKEEEFHFD 214
>At5g28080.1 68418.m03391 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 406
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 116 DYNYEQTSEVEALDSIYF--GDMAVIETKPFHKFSIPIKSEGFDDGEGLACHL 268
DYN ++T E +D + F D E K F I IK + D+G+GL L
Sbjct: 243 DYNGDETVESHEIDLLEFQNDDDEEEEDKRFGSVDISIKGKRRDNGDGLFLRL 295
>At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family
protein contains Pfam profile PF04889: Cwf15/Cwc15 cell
cycle control protein; similar to Cell cycle control
protein cwf15 (Swiss-Prot:P78794) [Schizosaccharomyces
pombe]
Length = 230
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +2
Query: 461 DKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDK 640
D++KKER E L K+K + EL E + L F + + + +
Sbjct: 143 DQIKKERVEERLRKEKEQQMEELNAKEEELLKGNPLLNTPTSFSVKRRWDDDVVFKNQAR 202
Query: 641 NKLTGRELFLQDTTLNESDLKFL 709
++ + F+ DT N+ KFL
Sbjct: 203 GEMKAPKRFINDTIRNDFHRKFL 225
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 473 KEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEID-MGIPAKREREAKDKNKL 649
+E +E + +Q+A+E + + E R E R+Q E++ AKR+R+ K+K KL
Sbjct: 414 REMQEALARRQEAEERKKKEEEEKLRKEEEER---RRQEELEAQAEEAKRKRKEKEKEKL 470
Query: 650 TGREL 664
++L
Sbjct: 471 LRKKL 475
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 473 KEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEID-MGIPAKREREAKDKNKL 649
+E +E + +Q+A+E + + E R E R+Q E++ AKR+R+ K+K KL
Sbjct: 367 REMQEALARRQEAEERKKKEEEEKLRKEEEER---RRQEELEAQAEEAKRKRKEKEKEKL 423
Query: 650 TGREL 664
++L
Sbjct: 424 LRKKL 428
>At1g66780.1 68414.m07591 MATE efflux family protein contains
TIGRfam profile: TIGR00797: MATE efflux family protein,
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 485
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 680 LYPEGIVLFQSVCSYLLLLVPS*LGFPC-QSQTVSSMPKMTLL*L*CLQTFSVLPLHLPF 504
L+ + ++ Q C Y + L+P+ G+ QS T + +L L L + L H+PF
Sbjct: 144 LFHQDPLISQLACRYSIWLIPALFGYSVLQSMTRFFQSQGLVLPL-FLSSLGALFFHVPF 202
Query: 503 VWLVSF 486
WL+ +
Sbjct: 203 SWLLVY 208
>At3g58210.1 68416.m06490 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 330
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 440 EWLNETWDKVKKEREERILAKQKADE-EAELKRFEGTRVTVESFLAWRK 583
+WL + ++VKK++EE + + E E ELK F+ + E+ L K
Sbjct: 266 DWLEKKLEEVKKKKEEEQTGEARIQELEEELKEFKQKCLDREAMLEKEK 314
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 333 ISTILLIKRNFSHILLNRVKKTWEWSW 413
IS L+K+ FS++L+ + +++ W+W
Sbjct: 18 ISFYFLVKKPFSYLLIKKTLQSYPWNW 44
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 413 VFTLVSAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFE 592
V V G + + W+KV K +AD + E+K+ + R +++ W + E
Sbjct: 14 VLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKT---WIQSSE 70
Query: 593 I-DMGIPAKREREAKDKNKLTGREL 664
I D + A E+ D KL +E+
Sbjct: 71 IKDKKVSASYEQSLVDARKLIEKEM 95
>At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative similar
to HEMA2 [SP|P49294], HEMA1 [SP|P42804]
Length = 524
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +2
Query: 476 EREERILAKQKADEEAELKRFEGT-----RVTVESFLAWRKQFEIDMGIPAKREREAKDK 640
E++ RI+ D + R++GT R T+E+ A + +E+D + ++ RE KDK
Sbjct: 464 EKQTRIIVNNILDYPMKHLRYDGTGSSKLRETLENMQAVNRIYELDGELLEEKIREKKDK 523
>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 884
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +2
Query: 215 IPIKSEGFDDGEGLACHLVFTYTSKYPDELPIIEIDNEENF---DNIVDKEELLTHLAEQ 385
+PI +D+ E + F Y S +P++ +IE + ++ + +D +E +
Sbjct: 392 LPILKYSYDNLESESVKTCFLYCSLFPED-DLIEKERLIDYWICEGFIDGDENKKGAVGE 450
Query: 386 GKENLGMVMVFTLVSAGQEWLNETWDKV 469
G E LG ++ +L+ G ++ N+++ K+
Sbjct: 451 GYEILGTLVCASLLVEGGKFNNKSYVKM 478
>At1g04650.1 68414.m00462 hypothetical protein
Length = 936
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 464 KVKKEREERILAKQKADEEAELKRFEGTRV--TVESFLAWRKQFEIDMGIPAKRERE 628
K+ E+E+ +L+ ++EE EL EGT V TV+ L R Q +++ ++R+
Sbjct: 818 KMFLEKEQALLSITPSEEELELLSKEGTEVKATVQKLLEGRSQRSMEVEKRPNKKRK 874
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 28.7 bits (61), Expect = 4.1
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +2
Query: 449 NETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKRERE 628
N+T D K +RE L QK E+A L+ + E+ Q + AKR+ E
Sbjct: 532 NDTRDPEKLQREREELELQKKKEKARLQ--AEAKAAEEARRKAEAQAAAEAAAEAKRKLE 589
Query: 629 AKDKNKLTGRELFLQDTTLNESDLKFLDD 715
+ + Q LNE + KFL+D
Sbjct: 590 LEREAARQALMEMEQSVELNE-NAKFLED 617
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 128 EQTSEVEALDSIYFGDMAVIETKPFHKFSIPIKSEGFDDGEG---LACHLVFTYTSKYP 295
EQ+ EVEA + +V + P SIP DD +G L H+ F Y S P
Sbjct: 783 EQSEEVEAPEPTPVNPSSVPSSSPSTDTSIPPPENNDDDDDGDFVLPPHIGFQYASPPP 841
>At5g28930.1 68418.m03578 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 509
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 551 VTVESFLAWRKQFEIDMGIPAKREREAKDKNKLTGRELFLQDTTL 685
+ + SF+A +F+I G+P + K K + TG E L ++L
Sbjct: 32 IGIGSFMARPPEFKIVTGLPCGKSESLKKKKRGTGGEQILYYSSL 76
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 437 QEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRK-QFEIDMGIPA 613
++W N ++++K +R+E A +K ++E E R E ES+ RK Q + ++ +
Sbjct: 257 KQWENVYFEELK-QRKETEKALRKRNDELEKMRSESETQITESYTVIRKLQEKNNLSMET 315
Query: 614 KRE-REAKDKNKLTGREL 664
R RE +++ K+ RE+
Sbjct: 316 FRGIREEQEELKIKLREV 333
>At3g61390.1 68416.m06871 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 373
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 437 QEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRK-QFEIDMGIPA 613
++W N ++++K +R+E A +K ++E E R E ES+ RK Q + ++ +
Sbjct: 257 KQWENVYFEELK-QRKETEKALRKRNDELEKMRSESETQITESYTVIRKLQEKNNLSMET 315
Query: 614 KRE-REAKDKNKLTGREL 664
R RE +++ K+ RE+
Sbjct: 316 FRGIREEQEELKIKLREV 333
>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
plant glutamate receptor family, PMID:11379626
Length = 903
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 503 QKADEEAE--LKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKD 637
Q+ EEAE ++R + SFL++ K+ E D + RER+ +D
Sbjct: 847 QQCPEEAEGSIRRRSSPSARIHSFLSFVKEKEEDAKARSSRERQLED 893
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +2
Query: 461 DKVKKEREERIL--AKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAK 634
++++KEREE +L K+KA +AE + E R E+ A + AKR+RE
Sbjct: 566 ERLRKEREELVLQKKKEKARLQAEAEAAEDARRQAEAEAA------AEAAAEAKRKREL- 618
Query: 635 DKNKLTGRELFLQDTTLNESDLKFLDD 715
++ L ++ T + +FL+D
Sbjct: 619 EREAARQALLKMEKTVEINENSRFLED 645
>At3g10570.1 68416.m01268 cytochrome P450, putative similar to
cytochrome P450 77A3 GB:O48928 [Glycine max]
Length = 513
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 327 RRISTILLIKRNFSHILLNRVKKTWEWSWYSH*CQLDKSGLMRLGIKLRKSVK 485
RRI L + H++L ++ + +EWS Y ++D +G + + ++K ++
Sbjct: 454 RRICPGLAMATVHVHLMLAKMVQEFEWSAYPPESEIDFAGKLEFTVVMKKPLR 506
>At2g45920.1 68415.m05710 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 400
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/80 (16%), Positives = 39/80 (48%)
Frame = +2
Query: 425 VSAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMG 604
+ G+EW + +++K+ +E + K+ ++ +++ R+T L + Q + ++
Sbjct: 225 IKRGKEWESAYLEELKQRKETEMELKKVREKLEKMRYISENRITESYMLVQKLQDKYNLA 284
Query: 605 IPAKREREAKDKNKLTGREL 664
R+ + + + GR++
Sbjct: 285 TKVLRKAKEERDLLIKGRDI 304
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 326 EENFDNIVDKEELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVKKEREERILAKQ 505
EE+ + K E+LT L E+G++ L + L + L E K K+ERE++ ++
Sbjct: 99 EESLQSEKIKMEILT-LLEEGRKRLNEEVAAQLEEEKEASLIEA--KEKEEREQQEKEER 155
Query: 506 KADEEAELKRFE 541
+ E LKR E
Sbjct: 156 ERIAEENLKRVE 167
>At3g58410.1 68416.m06510 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 328
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 440 EWLNETWDKV--KKEREERILAKQKADEEAELK 532
+WL + D+V KKE+E LAK + EE LK
Sbjct: 264 DWLEKKLDQVRDKKEKERSCLAKLQETEETLLK 296
>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 356 EELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVK 472
E+ + E GK N + +F +G+EW NE KV+
Sbjct: 31 EDAELKVPENGKNNNNVCELFYDTRSGEEWENEAGKKVR 69
>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 356 EELLTHLAEQGKENLGMVMVFTLVSAGQEWLNETWDKVK 472
E+ + E GK N + +F +G+EW NE KV+
Sbjct: 31 EDAELKVPENGKNNNNVCELFYDTRSGEEWENEAGKKVR 69
>At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB)
identical to trehalose-6-phosphate phosphatase (AtTPPB)
GI:2944180 [Arabidopsis thaliana]
Length = 374
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 246 ERGWPAI*YLLTHQSILMNYPLLKLTMRR 332
E+ WPA+ ++ +S+L++YP LKLT R
Sbjct: 250 EKRWPALAEVV--KSVLIDYPKLKLTQGR 276
>At1g66760.2 68414.m07589 MATE efflux family protein contains
TIGRfam profile: TIGR00797: MATE efflux family protein,
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 482
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 638 YLLLLVPS*LGFPCQSQTVSSMPKMTLL*L*CLQTFSVLPLHLPFVWLV 492
Y L LVP+ G+ V +L+ L + + L H+P WL+
Sbjct: 151 YCLWLVPALFGYSVLESLVRYFQSQSLIYPMVLSSLAALSFHVPLCWLM 199
>At1g66760.1 68414.m07588 MATE efflux family protein contains
TIGRfam profile: TIGR00797: MATE efflux family protein,
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 265
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 638 YLLLLVPS*LGFPCQSQTVSSMPKMTLL*L*CLQTFSVLPLHLPFVWLV 492
Y L LVP+ G+ V +L+ L + + L H+P WL+
Sbjct: 151 YCLWLVPALFGYSVLESLVRYFQSQSLIYPMVLSSLAALSFHVPLCWLM 199
>At1g64820.1 68414.m07349 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; contains 12
transmembrane domains, PMID: 11152613
Length = 502
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/65 (20%), Positives = 27/65 (41%)
Frame = -2
Query: 680 LYPEGIVLFQSVCSYLLLLVPS*LGFPCQSQTVSSMPKMTLL*L*CLQTFSVLPLHLPFV 501
++ + ++ Q C Y + L+P+ GF + + + L H+PF
Sbjct: 138 IFHQDPLISQLACRYSIWLIPALFGFTLLQPMTRYFQSQGITLPLFVSSLGALCFHIPFC 197
Query: 500 WLVSF 486
WL+ +
Sbjct: 198 WLLVY 202
>At5g46590.1 68418.m05736 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 292
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 188 ETKPFHKFSIPIKSEGFDDGEGLACHLVFTYTSKYPDELPIIEIDNEENFD 340
ET PFH F+ P+ +E ++ + + YP + +++FD
Sbjct: 195 ETMPFHSFANPVSTETDSSNIWISPEFILDSSKDYPQIQDVASQCFQQDFD 245
>At5g14400.1 68418.m01682 cytochrome P450 family protein similar to
steroid 22-alpha-hydroxylase; DWF4; CYP90B1 (GI:2935342)
[Arabidopsis thaliana]
Length = 439
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 599 MGIPAKREREAKDKNKLTGRELFLQDTTLNESDLKF 706
MG+ +RERE +D N E FL D+ ++ DL +
Sbjct: 200 MGMIKEREREEEDMNNAIREEDFL-DSIISNEDLNY 234
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 482 EERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDMGIPAKREREAKDKNKLTG 655
EE I++K+K ++ + K EG+ LAW K+F ++ A +++ K + TG
Sbjct: 242 EEMIVSKKKKSKKQKPKFKEGSHTESVLGLAWNKEFR-NILASASADKKVKVWDVATG 298
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,441
Number of Sequences: 28952
Number of extensions: 300344
Number of successful extensions: 877
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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