Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o01
         (137 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17219 Cluster: Egg-specific protein precursor; n=2; Bo...    77   6e-14
UniRef50_A4ARF5 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  

>UniRef50_Q17219 Cluster: Egg-specific protein precursor; n=2;
           Bombyx mori|Rep: Egg-specific protein precursor - Bombyx
           mori (Silk moth)
          Length = 559

 Score = 77.4 bits (182), Expect = 6e-14
 Identities = 36/39 (92%), Positives = 36/39 (92%)
 Frame = +3

Query: 21  MKTIYALLCLTLVQSISCSIFMTKXHSQDDXIQXPLDYV 137
           MKTIYALLCLTLVQSISCSIFMTK HSQDD IQ PLDYV
Sbjct: 1   MKTIYALLCLTLVQSISCSIFMTKQHSQDDIIQHPLDYV 39


>UniRef50_A4ARF5 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteriales bacterium HTCC2170|Rep: Putative
           uncharacterized protein - Flavobacteriales bacterium
           HTCC2170
          Length = 282

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 24  KTIYALLCLTLVQSISCSIFMTKXHSQDDXIQXP 125
           K IYALL LTLV ++SC+        Q++ +Q P
Sbjct: 4   KIIYALLALTLVFAVSCNKSDDNDDLQNEALQLP 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,799,477
Number of Sequences: 1657284
Number of extensions: 865704
Number of successful extensions: 2207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2207
length of database: 575,637,011
effective HSP length: 26
effective length of database: 532,547,627
effective search space used: 10118404913
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)