Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o01
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    24   3.2  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    22   9.6  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    22   9.6  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 36   ALLCLTLVQSISCSIFMTKXHSQDD 110
            A +C+  ++SIS +I MT+ +  DD
Sbjct: 1072 AKVCIRNLKSISLAIAMTRVYEGDD 1096


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 86  HEDAAGDALHQRQTQQCVYSLHV 18
           H   A   ++  QT+Q +YS+H+
Sbjct: 76  HYLLAESGMNAEQTRQKIYSIHI 98


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 11  CWXHEDYIRIAVSDAG----AEHLLQHLHD 88
           CW  +D + +A  D      A++L +H+HD
Sbjct: 187 CWTGDDNVILADLDIESTNVADYLHEHIHD 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,455
Number of Sequences: 5004
Number of extensions: 3542
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)