Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o01
         (137 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           26   5.4  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 116 NXVILTVXFRHEDAAGDALHQRQTQ 42
           N ++L   F+H D    ALH++Q Q
Sbjct: 323 NHILLQQYFQHSDMTFKALHEQQLQ 347


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 21  MKTIYALLCLTLVQSISCSIF 83
           ++ ++ALLC+  + +ISC++F
Sbjct: 60  IRQVFALLCIFGIFTISCNLF 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,403
Number of Sequences: 59808
Number of extensions: 30574
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 16,821,457
effective HSP length: 26
effective length of database: 15,266,449
effective search space used: 290062531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)