Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o01
         (137 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63200.1 68416.m07100 patatin-related low similarity to patat...    28   0.98 
At2g38060.1 68415.m04672 transporter-related low similarity to v...    25   6.9  

>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 11  CWXHEDYIRI---AVSDAGAEHLLQHLHDETXQSG 106
           CW   DY+RI    ++  GAE LL+    ET   G
Sbjct: 305 CWNRTDYVRIQANGLTSGGAEELLKERGVETAPFG 339


>At2g38060.1 68415.m04672 transporter-related low similarity to
           vesicular glutamate transporter 3 [Homo sapiens]
           GI:21213895, brain specific Na+-dependent inorganic
           phosphate cotransporter [Rattus norvegicus] GI:507415;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 512

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 9   TVGXMKTIYALLCLTLVQSISC-SIFMT 89
           ++G M    +LLCL   +S SC ++FMT
Sbjct: 400 SIGFMGPGLSLLCLNFAKSPSCAAVFMT 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,460
Number of Sequences: 28952
Number of extensions: 18909
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 12,070,560
effective HSP length: 26
effective length of database: 11,317,808
effective search space used: 215038352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)