Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n24
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    84   6e-17
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    84   6e-17
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    83   1e-16
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    75   2e-14
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   3.3  
At3g62670.1 68416.m07040 two-component responsive regulator fami...    28   4.4  
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta...    27   5.8  

>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
 Frame = +2

Query: 167 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 346
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R+K+K+ +TAD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75

Query: 347 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 454
                             DWLRV+A+  D   YELRYF
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
 Frame = +2

Query: 167 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 346
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R+K+K+ +TAD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75

Query: 347 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 454
                             DWLRV+A+  D   YELRYF
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
 Frame = +2

Query: 167 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 346
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R+K+K+ +TAD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75

Query: 347 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 454
                             DWLRV+A+  D   YELRYF
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +2

Query: 167 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 346
           + F IDC+ P +D+IL++   EK+L+E +KV GK   L N V + R   K+ + A+  FS
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77

Query: 347 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 454
                             DWLRV+AS  D   YE+RYF
Sbjct: 78  KRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 185 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 295
           C  P E++++D+    +++K H  +EG T+ LSN ++
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTII 434


>At3g62670.1 68416.m07040 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 426

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 233 KYLKEHVKVEGKT-NNLSNHVVVARDKTKVAITADIP 340
           KY++E + V+G T NN+++H+   R  +K   T   P
Sbjct: 244 KYMQEELNVQGLTRNNVASHLQKYRQSSKKTCTPQEP 280


>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
           domain-containing protein simlar to AHM1 [Triticum
           aestivum] GI:6691467; contains Pfam profile PF00226:
           DnaJ domain
          Length = 311

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 174 NFKLIFRLMPLPRILPPFTPFLPVFWCNWAFLATGF 67
           N +  F    +P+ LPP  P    ++C W F   GF
Sbjct: 192 NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,467,674
Number of Sequences: 28952
Number of extensions: 166861
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)