Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n22
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 33 0.035
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 28 1.00
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 28 1.00
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 1.00
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 1.7
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 7.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.0
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 25 9.3
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 33.1 bits (72), Expect = 0.035
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 167 LKTLRLSFADFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKL 346
LKT +SF + LPD AV +++T +N SI + PI + Q +DV+ +
Sbjct: 584 LKTNSMSFGELECLPDHMTKAAVDRIKRTGYDNDSIILSGPI-ITEQDVDVSINRIRKEK 642
Query: 347 TMTLYS 364
+ T+++
Sbjct: 643 SNTIFT 648
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 28.3 bits (60), Expect = 1.00
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 351 IVSLLCAFK--SFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFNFFISGKL 202
+++ LC F+ T +G +T + ++ V LSI+ + F+FF +G+L
Sbjct: 154 VIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPICVTFSFFNNGEL 205
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 1.00
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 342 LLCAFKSFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFNFFI 214
L+C F S+ MG TC IL L I L FN+++
Sbjct: 215 LMCDFCSYILMGLAWTCWPKVNIILQFLRIFGGIALIVFNYWV 257
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 28.3 bits (60), Expect = 1.00
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 263 NTSIFVESPIHVKIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKRLELLNKNTAS 442
NTS V+S + + + DL A K+ + HG D ++ SK+ ++ N +T
Sbjct: 789 NTSFPVDSKLAFQSLDVSQPDLQAKQKIASQVMKHGLKPEDLKL-PPSKKKKIENLSTVQ 847
Query: 443 DKND 454
D
Sbjct: 848 KPKD 851
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 27.5 bits (58), Expect = 1.7
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 194 DFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKLTMTLYSHGK 373
D+S++PD + + E N I + + IH+ I I+ +D NA N TL+ K
Sbjct: 85 DWSSMPDDETITEDSEEETFNGNANEITIPANIHIPI--IEESD-NASNNKLCTLFKKSK 141
Query: 374 DAS-DF-QVK 397
+ DF Q+K
Sbjct: 142 QPNLDFLQIK 151
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = +2
Query: 149 RHLHKVLKTLRLSFADFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDL 328
+H++K+L S F N P + ++ I N I + +++ +D +DL
Sbjct: 186 QHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQPILKQFTSQLQLLIVDESDL 245
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 316 INGLDFNMYGTLHKNTRIVIYRLLDSPH 233
IN D ++ + +NTRI++YRLL P+
Sbjct: 224 INDCDCGLH--VCENTRILMYRLLQKPY 249
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 324 SFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFN 223
S +++ W++ C G +++ + +F TVL+ FN
Sbjct: 195 SISNVIWLI-CFGAPLFLVIFICYIFFTVLSFFN 227
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 327 KSFTSMGWILTCMGLSTKILVLLSIVFSTVLTAFNFFI 214
+SFT G I T S IL ++VF +TA F +
Sbjct: 525 RSFTGTGSIFTISSSSRLILSFKTLVFGLGVTAMLFVL 562
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +2
Query: 194 DFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHV--KIQPIDVNDLNAHNKLTMTLYSH 367
DFS + DI++L A R + + SI V P + Q + DL AH L
Sbjct: 131 DFSRIHDIRELMAFRGYKFPAVDEDSIAVMKPNNSLRSAQELAREDLEAHKAKLQELLRR 190
Query: 368 G 370
G
Sbjct: 191 G 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,716
Number of Sequences: 5004
Number of extensions: 44013
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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