Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n22
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1056 + 10752363-10752503,10752711-10752771,10753483-107536...    33   0.15 
02_02_0212 - 7915358-7915431,7915515-7916127                           31   1.0  
11_06_0182 + 20997071-20997832,20998010-20998150                       29   2.4  
11_06_0092 + 19973364-19975983,19976272-19976648                       28   5.5  

>08_01_1056 +
           10752363-10752503,10752711-10752771,10753483-10753620,
           10754667-10754883,10755760-10755861,10756030-10756133,
           10756383-10756483,10756563-10756607,10756724-10756855
          Length = 346

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 236 RTVEKTIDNNTSIFVESPIHVKIQPIDVND-LNAHNKLTMTLYSHGKDASDFQVKQTSKR 412
           R + K  D       E+ +  K   + VN+ L  H +L   L  H  D ++ ++++  KR
Sbjct: 250 RQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDH-VDVTNSRLQRVQKR 308

Query: 413 LELLNKNTASDKNDVCLI 466
           L +LNK T    + +CL+
Sbjct: 309 LAILNKRTKGGCSCMCLL 326


>02_02_0212 - 7915358-7915431,7915515-7916127
          Length = 228

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +2

Query: 299 KIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKRLELLNKNTASDKNDVCLIQVPY 478
           KIQ +D +D+N  N +T+T      D  +F+      R + LN    + K  V  +Q  Y
Sbjct: 20  KIQQLDQSDVNEGNVMTITPDKLTPDQKEFEAMMQQARNQFLNSFMQTRKGTV--VQ-KY 76

Query: 479 QLKVQVSTSDNAS 517
           Q++V       +S
Sbjct: 77  QVRVVADVPGTSS 89


>11_06_0182 + 20997071-20997832,20998010-20998150
          Length = 300

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 503 KLKPELLAGKVPESDTRRFYLRRCSCLTILAVWKS 399
           K+ P+++ GKV +      Y+   SC  +L +W+S
Sbjct: 182 KVAPKIVMGKVKDFLYENIYIVEASCGNLLQIWRS 216


>11_06_0092 + 19973364-19975983,19976272-19976648
          Length = 998

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +2

Query: 143 GRRHLHKVLKTLRLSFADFSNL--PDIKKLNAVRTVEKTIDNNTS 271
           GRRH H+V+K LRL  ++ + +  P +  L+ +RT++ + DN+ S
Sbjct: 73  GRRHPHRVVK-LRLRSSNLAGIISPSLGNLSFLRTLQLS-DNHLS 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,180
Number of Sequences: 37544
Number of extensions: 236400
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)