Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n22
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    33   0.23 
U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine rec...    29   2.1  
AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical p...    29   3.7  
AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopepti...    29   3.7  
AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide ...    29   3.7  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    28   4.9  
AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical...    28   6.5  
AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical...    27   8.6  

>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 25/92 (27%), Positives = 41/92 (44%)
 Frame = +2

Query: 233 VRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKR 412
           VR +E  ID   S F     + K +   + +L A NK  ++     K  ++     TS +
Sbjct: 634 VRVLEAEIDQFKSAFENEQEYGKEKSAKIRELEAQNKTLLSEMEKVKHVAENLEAFTSDK 693

Query: 413 LELLNKNTASDKNDVCLIQVPYQLKVQVSTSD 508
             LL +  + +KN   L Q   QL  ++ST +
Sbjct: 694 DNLLEELESKNKNIEHLKQEIAQLNEKISTKE 725


>U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine
           receptor, class w protein127 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = -3

Query: 363 LYRVIVSLLCAFKSFTSMGWILTCMGLS--TKILVLLSIVFSTVLTA--FNFFISGKLLK 196
           +Y  I+  +  F    +MG+    + +   T+I   L  VFS   +A   + FI   L+ 
Sbjct: 277 VYNTIIFSIVLFPIGVTMGFQYLFIEIKGITRIFEYLGFVFSMFFSANTMSHFIICLLIS 336

Query: 195 SA-KDNLKVLRTLCKCLRPVRENILMYFTYT 106
           S   D  K+L T C C R    N  +  T T
Sbjct: 337 SQYNDTAKLLCTCCCCARNKNNNTSISLTRT 367


>AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical
           protein Y42G9A.2 protein.
          Length = 121

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 261 LSIVFSTVLTAFNFFISGKLLKSAKDNLKVLRTLCKCLRPV 139
           L  +FS +LT F+   + +  K +K   K +  L  CL PV
Sbjct: 6   LIFIFSVILTVFHVECATRAPKLSKHTKKTVNKLVNCLTPV 46


>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 309 GWILTCMGLSTKILVLLSI--VFSTVLTAFNFFIS 211
           GW + C  +S  ++   ++  + STVLT FN  +S
Sbjct: 170 GWTIGCFAVSKSVVPRFNLFSILSTVLTLFNLIVS 204


>Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 287 PIHVKIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKRLELLNKNTASDKNDVCLI 466
           P  +K +   ++ L A +K+    Y           KQ+SK LEL      ++ +++C++
Sbjct: 143 PSEIKQEITPLSSLGADHKILFDFYRKNNFPIFLYSKQSSKMLELSELENNTNPDEICVV 202


>AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 287 PIHVKIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKRLELLNKNTASDKNDVCLI 466
           P  +K +   ++ L A +K+    Y           KQ+SK LEL      ++ +++C++
Sbjct: 143 PSEIKQEITPLSSLGADHKILFDFYRKNNFPIFLYSKQSSKMLELSELENNTNPDEICVV 202


>AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopeptide
           symporter OPT-3 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 309 GWILTCMGLSTKILVLLSIVFSTVLTAFNFFISGKLLKSAKDNLKVLRTLCKCL--RPVR 136
           GW+   +   T++  L  +    +LTAF+F I+G L     + ++   +L +    R   
Sbjct: 332 GWVYPALRKITRVTPLRKMAVGGLLTAFSFAIAGVLQLKVNETMEFPPSLGRIYLQRVGN 391

Query: 135 ENILMYFTY 109
           E+++  F Y
Sbjct: 392 ESLISDFRY 400


>AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide
           transporter protein 3 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 309 GWILTCMGLSTKILVLLSIVFSTVLTAFNFFISGKLLKSAKDNLKVLRTLCKCL--RPVR 136
           GW+   +   T++  L  +    +LTAF+F I+G L     + ++   +L +    R   
Sbjct: 332 GWVYPALRKITRVTPLRKMAVGGLLTAFSFAIAGVLQLKVNETMEFPPSLGRIYLQRVGN 391

Query: 135 ENILMYFTY 109
           E+++  F Y
Sbjct: 392 ESLISDFRY 400


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +2

Query: 170 KTLRLSFADFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKLT 349
           +T+  +    S  PDI KL   +T+  T     S+F       K   + +N+   HN LT
Sbjct: 385 QTIVSALTRLSRWPDIDKLLQPKTITMTFSAAKSVFKGKKSTSK-WGVSINN---HNLLT 440

Query: 350 MTLYSHGKDASDF 388
           +   SH    +DF
Sbjct: 441 IVKRSHPSPPTDF 453


>AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical
           protein Y87G2A.12 protein.
          Length = 791

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 255 IVFSTVLTAFNFFISGKLLKSAKDNLKVLRTLCKCLRPVRE 133
           I+    LT+ N+ ++ KLLK   DN  +LR L   LR ++E
Sbjct: 275 IIHHLPLTSANYHVAWKLLKERFDNTTILRHL--LLRKLQE 313


>AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical
           protein Y47D3A.22 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -1

Query: 542 RXLVLKGEQKHYRKLKPELLAGKVPESDTRRFYLRRCSCLTILAVWKSV*LGNRSHPCRD 363
           R +++   Q   R++ P ++A    + D+    +   SCL  +A  K    G+R   C D
Sbjct: 573 RSIIVHIAQTKQRQVMPMMMAMSEDKFDSTEVTMCTFSCLNSVATVKLDPCGHRV-ACVD 631

Query: 362 CTE 354
           CTE
Sbjct: 632 CTE 634


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,784
Number of Sequences: 27780
Number of extensions: 242306
Number of successful extensions: 712
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)