Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n21
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    22   4.4  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   4.7  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   4.7  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.2  

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 214 DLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFM 315
           ++K    K  QD   KLV  LQ   +  D+DQFM
Sbjct: 271 EVKQSDSKKLQDEYQKLVRGLQDANAANDEDQFM 304


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 22.2 bits (45), Expect(2) = 4.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 427  DPYMMGKIACANVLSDLYAMGVTECDNMLMLLGVSTKMTEKE 552
            DPY+M  +   + LS +Y    T      + L +ST + +K+
Sbjct: 1167 DPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHISTVLYQKQ 1208



 Score = 21.8 bits (44), Expect(2) = 4.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 187  ASFRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQ 309
            +S  L+  A ++  +  VP D   K+   L + Y   D+D+
Sbjct: 1110 SSHELSLVAFIREMAMPVPNDEFKKISTILARGYLALDEDE 1150


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 579 HYKRNNDVAF-LFSHFR*DTQQHEHIVALR-NTHRV*VAKNIGTCNLTHHIWVIH*WVKK 406
           ++  N D A  L    R   Q++E    L+ NTH   + K  G     HH WV H W  K
Sbjct: 544 YWPDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWV-HTWFDK 602


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 463 VLSDLYAMGVTECDNMLMLLGVSTKMTEKE 552
           +L+D+Y   +  C N L LL ++ K  + E
Sbjct: 581 LLTDIYNSDIRSCINSLQLLSLNNKRIDSE 610


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 502 DNMLMLLGVSTKMTEKERDVVIP 570
           D ML ++  STK+ +K  D++IP
Sbjct: 312 DRMLEIIPSSTKVLDKASDILIP 334


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = -1

Query: 578  IIRGITTSRSFSVIFVETPNNMSILSHSVTPI-AYRSLRTLAHAILPIIYGSSTNG*KKS 402
            ++   T   S SV+   TP   S + ++ TPI +  +L T        +  SST     +
Sbjct: 2333 VVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSST 2392

Query: 401  VV*TKQSPPCLSGVTEQSKPMPMRGIATCINWS*SACE*SCCKDSTSFPRTS 246
            VV T  +P   S V   S P+     +T +N S S    S    ST    +S
Sbjct: 2393 VVNT-STPITSSSVLNSSTPITS---STVVNTSTSITSSSVLNSSTPITSSS 2440



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
 Frame = -1

Query: 578  IIRGITTSRSFSVIFVETPNNMSILSHSVTPI-AYRSLRTLAHAILPIIYGSSTNG*KKS 402
            I+   T   S S++   TP   S + +S TPI +  +L T        +  SST     S
Sbjct: 3125 ILNSSTPITSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSS 3184

Query: 401  VV*TKQSPPCLSGVTEQSKPMPMRGIATCINWS*SACE*SCCKDSTSFPRTS 246
            +V    +P   S V   S P+     +T +N S      S    ST+   +S
Sbjct: 3185 IV-NSSTPITSSSVLNSSTPITS---STTLNTSTPITSSSVLNSSTAITSSS 3232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,772
Number of Sequences: 5004
Number of extensions: 50078
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)