Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n21
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...   166   1e-41
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr...    32   0.35 
U21309-6|AAT92086.1|  541|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U21309-5|AAT92085.1|  536|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U21309-4|AAN73883.1|  546|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY314778-1|AAQ84885.1|  546|Caenorhabditis elegans calcitonin re...    30   1.4  
AY314777-1|AAQ84884.1|  541|Caenorhabditis elegans calcitonin re...    30   1.4  
AY314776-1|AAQ84883.1|  536|Caenorhabditis elegans calcitonin re...    30   1.4  
AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family ...    27   10.0 

>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score =  166 bits (403), Expect = 1e-41
 Identities = 79/143 (55%), Positives = 106/143 (74%)
 Frame = +1

Query: 160 FDPVAHDLEASFRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRIG 339
           FDPV++ L+  F LT+   +KG  CKVP++VL +L+++ + D    + D+        + 
Sbjct: 11  FDPVSNGLDEDFVLTKLTGMKGCGCKVPRNVLLQLLQTFKTDLV-INNDE--------VD 61

Query: 340 IGLDCSVTPLRHGGLCLVQTTDFFYPLVDDPYMMGKIACANVLSDLYAMGVTECDNMLML 519
           IGLD  V PLRH GL LVQTTDFFYPL+DDPY+MG++ CANVLSDLYAMGV+ECDNMLML
Sbjct: 62  IGLDSCVIPLRHPGLRLVQTTDFFYPLIDDPYIMGRVTCANVLSDLYAMGVSECDNMLML 121

Query: 520 LGVSTKMTEKERDVVIPLIMRGF 588
           L V+  + EK+RD+V+PL ++GF
Sbjct: 122 LAVAIDLNEKQRDIVVPLFIQGF 144


>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
           protein ZK154.5 protein.
          Length = 1105

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -1

Query: 275 KDSTSFP--RTS*GTLQLLPFRSANRVSRKLASKSCATGS---NGRRKAIELG 132
           KDST +   R + GT+ L   ++  R+ +++ S  C+T S   +GR K+ E G
Sbjct: 677 KDSTIYQLKRFTVGTISLTEQKTVERIKQEIPSSECSTASLDGDGREKSFETG 729


>U21309-6|AAT92086.1|  541|Caenorhabditis elegans Hypothetical
           protein C13B9.4c protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 289 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 170
           N LA  + Q F E ++VL   +PL ++++   NL P R P
Sbjct: 28  NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67


>U21309-5|AAT92085.1|  536|Caenorhabditis elegans Hypothetical
           protein C13B9.4b protein.
          Length = 536

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 289 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 170
           N LA  + Q F E ++VL   +PL ++++   NL P R P
Sbjct: 28  NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67


>U21309-4|AAN73883.1|  546|Caenorhabditis elegans Hypothetical
           protein C13B9.4a protein.
          Length = 546

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 289 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 170
           N LA  + Q F E ++VL   +PL ++++   NL P R P
Sbjct: 28  NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67


>AY314778-1|AAQ84885.1|  546|Caenorhabditis elegans calcitonin
           receptor-like proteinSEB-1C protein.
          Length = 546

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 289 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 170
           N LA  + Q F E ++VL   +PL ++++   NL P R P
Sbjct: 28  NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67


>AY314777-1|AAQ84884.1|  541|Caenorhabditis elegans calcitonin
           receptor-like proteinSEB-1B protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 289 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 170
           N LA  + Q F E ++VL   +PL ++++   NL P R P
Sbjct: 28  NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67


>AY314776-1|AAQ84883.1|  536|Caenorhabditis elegans calcitonin
           receptor-like proteinSEB-1A protein.
          Length = 536

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 289 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 170
           N LA  + Q F E ++VL   +PL ++++   NL P R P
Sbjct: 28  NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67


>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/68 (35%), Positives = 25/68 (36%)
 Frame = +1

Query: 202 TRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRIGIGLDCSVTPLRHGG 381
           TR   L G  C    D   KL ESL      A  D F     P      DC  TP R G 
Sbjct: 554 TRPEALIGERCLTSSDKSSKLNESLDVVPKLAALDSFHSTGTPVFTDCNDCP-TPKRSGF 612

Query: 382 LCLVQTTD 405
            C V T +
Sbjct: 613 NCEVWTAE 620


>AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family
           protein 18 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 274 KTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAPP 167
           K  Q   E+ +VLCN+F   Q  + + + P + +PP
Sbjct: 13  KYPQSAEEYHKVLCNYFITLQSAMQSTSRPSSSSPP 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,715,004
Number of Sequences: 27780
Number of extensions: 285008
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)