Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n21
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   3.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 578 IIRGITTSRSFSVIFVETPNNMSILS 501
           +  G+T +R  S++  + PN ++IL+
Sbjct: 635 VASGLTKARGHSLLVADRPNFVTILA 660


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 406 FFYPLVDDPYMMGKIACANVLSDLYAMGVTECDNM 510
           FF P++   Y+ G+I+C  + S    +  TE +N+
Sbjct: 207 FFLPMLVMLYVYGRISCV-IASRHRNLEATESENV 240


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 262 VFREHLEVLCNFFPLDQQ 209
           +FR   ++   FFP D+Q
Sbjct: 126 IFRSSCDIDVEFFPFDEQ 143


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 262 VFREHLEVLCNFFPLDQQ 209
           +F+   E+   +FP DQQ
Sbjct: 140 IFKSSCEIDVRYFPFDQQ 157


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 71  DILHQNNDIYVFR 33
           D+L  NND+Y+++
Sbjct: 369 DVLLSNNDVYLYQ 381


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 71  DILHQNNDIYVFR 33
           D+L  NND+Y+++
Sbjct: 407 DVLLSNNDVYLYQ 419


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 346 LDCSVTPLRHGG 381
           LDCS+ P  H G
Sbjct: 25  LDCSIKPKDHNG 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,699
Number of Sequences: 438
Number of extensions: 3205
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)