Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n21
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    29   2.3  
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    29   3.1  
At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC...    28   5.4  

>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/102 (19%), Positives = 50/102 (49%)
 Frame = +1

Query: 13  ILRPLKPRKT*ISLFWCNMSYQTSVAQDSLAAAQLEMAGNPNSIALRRPFDPVAHDLEAS 192
           +L P+K R+  +   W +  +  ++A  + + A L ++ NP+        D  + D+   
Sbjct: 35  VLSPVKGRRR-LPTCWSSSLFPLAIAASATSFAYLNLS-NPSISESSSALD--SRDITVG 90

Query: 193 FRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMH 318
            + +  A +KG   +VP++++ +L   L+ + +    +++ H
Sbjct: 91  GKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDYDERYFH 132


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
            putative similar to SP|Q03460 Glutamate synthase [NADH],
            chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
            {Medicago sativa}
          Length = 2208

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 94   DSLAAAQLEMAGNPNSIALRRPFDPVAHDLEASFRLTRFADLKGRSCKVPQD 249
            D LA A+L+ A   NS+A  + +    ++L     L      K    K+P D
Sbjct: 950  DPLAIAKLQEAARTNSVAAYKEYSKRINELNKQSNLRGLMKFKDADVKIPLD 1001


>At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC) /
           sigma factor 3 (SIG3) identical to sigma factor SigC
           [Arabidopsis thaliana] GI:5478585, sigma factor 3 (SIG3)
           [Arabidopsis thaliana] GI:2353175, plastid RNA
           polymerase sigma-subunit [Arabidopsis thaliana]
           GI:2398853; contains Pfam profiles PF04545: Sigma-70,
           region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
           region 2
          Length = 571

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 320 TCINWS*SACE*SCCKDSTSFPRTS*GTLQLLPFRSANRVSRKLASKSCATGSNGRRKAI 141
           TC++    +   SC  D+T    T   T     F S+ R  +K A +S  T  NG + ++
Sbjct: 189 TCLSRYRGSSITSCLSDTTELVDT---TPNQQVFVSSRRKVKKKARRSSVTAENGDQSSL 245

Query: 140 ELGL 129
            +GL
Sbjct: 246 PIGL 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,931
Number of Sequences: 28952
Number of extensions: 267612
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)