Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n20
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 31 0.45
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 31 0.45
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta... 28 5.6
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ... 27 7.4
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si... 27 9.7
At1g79500.3 68414.m09267 2-dehydro-3-deoxyphosphooctonate aldola... 27 9.7
At1g79500.2 68414.m09266 2-dehydro-3-deoxyphosphooctonate aldola... 27 9.7
At1g79500.1 68414.m09265 2-dehydro-3-deoxyphosphooctonate aldola... 27 9.7
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 31.5 bits (68), Expect = 0.45
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 75 VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEK 209
+W ++ L L VF +A PF ++ P H+IED +E EK
Sbjct: 1148 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1192
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 31.5 bits (68), Expect = 0.45
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 75 VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEK 209
+W ++ L L VF +A PF ++ P H+IED +E EK
Sbjct: 1147 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1191
>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
BTB/POZ domain, INTERPRO:IPR000210
Length = 517
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 472 HITQTIKTSSSSACISPLLDVNLSHSP 552
H + ++ +SSSS +SP +NLS SP
Sbjct: 22 HHSSSLSSSSSSLSLSPKQPINLSSSP 48
>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
long chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 748
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 140 QQSDSSNIIKDAHQRQLNDAPYAQN*ATKRQFWSTQFAAH 21
Q+ I K+A + L++ TK ++W+T F+AH
Sbjct: 640 QKMKCEAITKEAMEEFLDEVDAVGGVGTKGEYWTTYFSAH 679
>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase, Zea mays,
PIR2:JQ1329; contains non-consensus (GC) donor splice
site at intron 4
Length = 1050
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 130 SLCWRIYHLMRKIRLIL 180
++CWRI+HL RK + I+
Sbjct: 102 NICWRIWHLARKKKQIV 118
>At1g79500.3 68414.m09267 2-dehydro-3-deoxyphosphooctonate aldolase
/ phospho-2-dehydro-3-deoxyoctonate aldolase /
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
(KDSA) identical to Swiss-Prot:Q9AV97
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
(Phospho-2- dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) [Arabidopsis thaliana]
Length = 290
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -1
Query: 353 LTAKITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDEVFD 180
L A T I++ G P +M N +++ NP ++ + + F +ND + D
Sbjct: 123 LVAAAQTGKIINIKKGQFCAPSVME--NSAEKIRLAGNPNVMVCERGTMFGYNDLIVD 178
>At1g79500.2 68414.m09266 2-dehydro-3-deoxyphosphooctonate aldolase
/ phospho-2-dehydro-3-deoxyoctonate aldolase /
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
(KDSA) identical to Swiss-Prot:Q9AV97
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
(Phospho-2- dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) [Arabidopsis thaliana]
Length = 290
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -1
Query: 353 LTAKITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDEVFD 180
L A T I++ G P +M N +++ NP ++ + + F +ND + D
Sbjct: 123 LVAAAQTGKIINIKKGQFCAPSVME--NSAEKIRLAGNPNVMVCERGTMFGYNDLIVD 178
>At1g79500.1 68414.m09265 2-dehydro-3-deoxyphosphooctonate aldolase
/ phospho-2-dehydro-3-deoxyoctonate aldolase /
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
(KDSA) identical to Swiss-Prot:Q9AV97
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
(Phospho-2- dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) [Arabidopsis thaliana]
Length = 290
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -1
Query: 353 LTAKITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDEVFD 180
L A T I++ G P +M N +++ NP ++ + + F +ND + D
Sbjct: 123 LVAAAQTGKIINIKKGQFCAPSVME--NSAEKIRLAGNPNVMVCERGTMFGYNDLIVD 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,347
Number of Sequences: 28952
Number of extensions: 266173
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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