Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n19
         (167 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   2.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   2.0  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      19   4.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    19   4.7  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    18   8.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 156 N*TQKLRSEXCNNKXQQKRH 97
           N  ++LR   C N+ + K H
Sbjct: 326 NHNEQLRKYLCKNEDETKNH 345


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 156 N*TQKLRSEXCNNKXQQKRH 97
           N  ++LR   C N+ + K H
Sbjct: 218 NHNEQLRKYLCKNEDETKNH 237


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 3  TCISRTMTERCQNK 44
          T   R MT+RC+ K
Sbjct: 4  TGADRLMTQRCKEK 17


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 75  IICFGITSASFAXIYYYRXH 134
           +IC  + S   A   +YR H
Sbjct: 138 VICHRVLSCKSALQMHYRTH 157


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 36  QNKFVENFVNQNYII 80
           Q +++EN  +  YII
Sbjct: 429 QKEYLENLPSDKYII 443


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,677
Number of Sequences: 336
Number of extensions: 355
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 35
effective length of database: 110,825
effective search space used:  2216500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)