Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n19
         (167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81540-13|CAB04409.1|  210|Caenorhabditis elegans Hypothetical p...    29   0.58 
AL021491-5|CAA16376.1|  210|Caenorhabditis elegans Hypothetical ...    29   0.58 
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    25   5.4  
U28943-13|AAA68364.1|  128|Caenorhabditis elegans Hypothetical p...    25   5.4  

>Z81540-13|CAB04409.1|  210|Caenorhabditis elegans Hypothetical
           protein F46B3.16 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 12  SRTMTERCQNKFVENFVNQNYIICF 86
           S+++T+RC N+F++N+VN   +  F
Sbjct: 99  SKSITDRCINQFIKNWVNGKCVESF 123


>AL021491-5|CAA16376.1|  210|Caenorhabditis elegans Hypothetical
           protein F46B3.16 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 12  SRTMTERCQNKFVENFVNQNYIICF 86
           S+++T+RC N+F++N+VN   +  F
Sbjct: 99  SKSITDRCINQFIKNWVNGKCVESF 123


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
           protein C28A5.2 protein.
          Length = 1218

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 143 SYEVXSVIINXSKRGTXNSEANNIILIN 60
           SYEV   +   +  G  ++  NNI+LIN
Sbjct: 539 SYEVSGALARTNPNGQLSAADNNIVLIN 566


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
           protein C28A5.1 protein.
          Length = 1223

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 143 SYEVXSVIINXSKRGTXNSEANNIILIN 60
           SYEV   +   +  G  ++  NNI+LIN
Sbjct: 539 SYEVSGALARTNPNGQLSAADNNIVLIN 566


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 60  VNQNYIICFGITSASFAXIYYYRXHFVT 143
           V  +Y+ CF  +SASF+  Y Y     T
Sbjct: 179 VQTSYVGCFDDSSASFSDYYVYSTTITT 206


>U28943-13|AAA68364.1|  128|Caenorhabditis elegans Hypothetical
           protein E04F6.9 protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 92  NSEANNIILINKIFYKLILTSFS-HGSRNT 6
           N EANN ILI K F K  + ++S H ++NT
Sbjct: 77  NYEANNGILIIKKFTKADVGTYSEHPAKNT 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,590
Number of Sequences: 27780
Number of extensions: 28633
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)