Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n19
         (167 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   2.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   2.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    19   5.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    19   5.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    19   5.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    19   5.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    19   5.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    19   5.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    19   5.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   9.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   9.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     18   9.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 21  MTERCQNKFVENFVNQNYIICFGI 92
           MT    + F    ++ +Y++C+GI
Sbjct: 199 MTACGTDYFNRGLLSASYLVCYGI 222


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 21  MTERCQNKFVENFVNQNYIICFGI 92
           MT    + F    ++ +Y++C+GI
Sbjct: 75  MTACGTDYFNRGLLSASYLVCYGI 98


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  RTMTERCQNKFVENFVNQNY 74
           RT  ERC+   + + ++ NY
Sbjct: 70  RTERERCKEPKIISSLSNNY 89


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  RTMTERCQNKFVENFVNQNY 74
           RT  ERC+   + + ++ NY
Sbjct: 70  RTERERCKEPKIISSLSNNY 89


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  RTMTERCQNKFVENFVNQNY 74
           RT  ERC+   + + ++ NY
Sbjct: 70  RTERERCKEPKIISSLSNNY 89


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  RTMTERCQNKFVENFVNQNY 74
           RT  ERC+   + + ++ NY
Sbjct: 70  RTERERCKEPKIISSLSNNY 89


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  RTMTERCQNKFVENFVNQNY 74
           RT  ERC+   + + ++ NY
Sbjct: 70  RTERERCKEPKIISSLSNNY 89


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  RTMTERCQNKFVENFVNQNY 74
           RT  ERC+   + + ++ NY
Sbjct: 70  RTERERCKEPKIISSLSNNY 89


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  RTMTERCQNKFVENFVNQNY 74
           RT  ERC+   + + ++ NY
Sbjct: 70  RTERERCKEPKIISSLSNNY 89


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 83   ANNIILINKIFYK 45
            A+  +LIN +FY+
Sbjct: 1427 ADEDLLINNVFYE 1439


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 90  FRSK*YNFD*QN 55
           FRSK Y F  QN
Sbjct: 370 FRSKPYRFGIQN 381


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 90  FRSK*YNFD*QN 55
           FRSK Y F  QN
Sbjct: 76  FRSKPYRFGIQN 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,906
Number of Sequences: 438
Number of extensions: 430
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)