Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n18
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   128   5e-31
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   123   2e-29
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   0.99 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.3  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   3.0  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   7.0  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.0  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   9.2  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  128 bits (309), Expect = 5e-31
 Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = +3

Query: 135 GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 314
           GIDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPI
Sbjct: 2   GIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 315 SVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 488
           S+S++A     K  + EG   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGGE
Sbjct: 62  SISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGE 121

Query: 489 ILTFDQLALRAPT 527
           +LT DQLALRAPT
Sbjct: 122 VLTLDQLALRAPT 134


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  123 bits (296), Expect = 2e-29
 Identities = 61/133 (45%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
 Frame = +3

Query: 135 GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 314
           GIDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPI
Sbjct: 2   GIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61

Query: 315 SVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 488
           S+S++A     K  + +    VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGGE
Sbjct: 62  SISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGE 121

Query: 489 ILTFDQLALRAPT 527
           +LT DQLALRAPT
Sbjct: 122 VLTLDQLALRAPT 134


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 396 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 509
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 497 SKNFSSSSQNACTSFFGNMKSSHRH 423
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 494 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 381
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 363 LIAVVVGTVTNDVRLYKI 416
           L+ +VV  +TNDVRL++I
Sbjct: 694 LLKMVVPLITNDVRLWRI 711


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 121 YEYFRVLTSIINTTGK 168
           YEY+ + TSI++ TGK
Sbjct: 627 YEYYSIPTSILDKTGK 642


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 118 SYEYFRVLTSIINTTGKFGAPKL 186
           S++Y R ++ I N+ G F A +L
Sbjct: 239 SFQYIRKMSEIFNSFGNFAADEL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,506
Number of Sequences: 5004
Number of extensions: 44763
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)