Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n18
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 126 1e-29
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 125 3e-29
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 124 6e-29
01_06_0579 + 30379243-30379617 29 1.7
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.3
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 3.1
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 4.0
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 7.1
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 27 9.3
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 9.3
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 9.3
02_05_0718 + 31203358-31203717,31203826-31204011 27 9.3
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 126 bits (304), Expect = 1e-29
Identities = 67/131 (51%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = +3
Query: 135 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 311
GID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPP 61
Query: 312 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 491
+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE
Sbjct: 62 LSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGEC 119
Query: 492 LTFDQLALRAP 524
LTFDQLALRAP
Sbjct: 120 LTFDQLALRAP 130
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 125 bits (301), Expect = 3e-29
Identities = 68/137 (49%), Positives = 89/137 (64%), Gaps = 7/137 (5%)
Frame = +3
Query: 135 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 311
GID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPP 61
Query: 312 ISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARIL 473
+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI+
Sbjct: 62 LSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARII 121
Query: 474 AAGGEILTFDQLALRAP 524
AGGE LTFDQLALRAP
Sbjct: 122 NAGGECLTFDQLALRAP 138
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 124 bits (298), Expect = 6e-29
Identities = 66/131 (50%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = +3
Query: 135 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 311
GID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPP 61
Query: 312 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 491
+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE
Sbjct: 62 LSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGEC 120
Query: 492 LTFDQLALRAP 524
LTFDQLALRAP
Sbjct: 121 LTFDQLALRAP 131
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 411 CTVSRHL*LSPLPRQSNPHELASS 340
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 382 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 278
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 249 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 425
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 426 TVAALHVTEKARARILAAGGEI 491
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 479 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 381
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 375 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 515
++G++ DV I + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 484 PPAAKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 353
P + RAR+ S+T A +V F + T TTTA K R
Sbjct: 293 PRPSHRRARSMSITGSAKSVRFPFTRQASRSTTTTTTTAFKVIR 336
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 364 KPSRVGFFMWRAKRDTEIG 308
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 272 STPALYEPYQPATNLCV-SFGAPHEEANS 355
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 359 GFDCRGSGDSHK*RETVQDTEDDGGCSSCYRK 454
G D GSGD K R D +DDG Y+K
Sbjct: 122 GDDDDGSGDERKPRYKKHDDDDDGERKPRYKK 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,260,083
Number of Sequences: 37544
Number of extensions: 296458
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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