Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n18
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              138   3e-33
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   2.4  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   7.2  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   27   9.6  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  138 bits (334), Expect = 3e-33
 Identities = 72/141 (51%), Positives = 92/141 (65%)
 Frame = +3

Query: 102 CDNYVFL*IFQGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRR 281
           C+ Y  L  F GIDI  KH +K  R E  SQ++               TNAKFNQIV++R
Sbjct: 100 CNKYWTL--FHGIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKR 157

Query: 282 LFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKAR 461
           L MSR  RPP+S++RL R MK    +  I VVVG++T+D R++++P + + AL  +E AR
Sbjct: 158 LCMSRTKRPPLSLARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETAR 217

Query: 462 ARILAAGGEILTFDQLALRAP 524
           ARIL AGGEILTFDQLALRAP
Sbjct: 218 ARILKAGGEILTFDQLALRAP 238


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 524 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 414
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 448 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 353
           +T R  T++FGIL  L +     TT  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 380 HYHGNQTLTSWLLHVARQTRHRDWW 306
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 427 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLR 525
           RWL ++  + L H  WL   ++L  +SWL+ +R
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVR 49


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 SSAHRS*ISRYLLEVTCKALQILGQT 244
           ++ HR  ++RY+   TC  L + G T
Sbjct: 84  ATCHRQHVTRYMSHATCHTLHVTGNT 109


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 371 GNQTLTSWLLHVARQTRHRDWWP 303
           G  T + W LH ++Q RH+  WP
Sbjct: 177 GIDTGSLWQLHYSQQWRHKGRWP 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,813
Number of Sequences: 59808
Number of extensions: 334216
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)