Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n18
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 123 6e-29
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 119 1e-27
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 96 1e-20
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.48
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 29 1.5
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 29 1.9
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 29 1.9
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 29 1.9
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 3.4
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 4.5
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote... 27 5.9
At1g32190.1 68414.m03959 expressed protein 27 5.9
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 123 bits (297), Expect = 6e-29
Identities = 66/131 (50%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Frame = +3
Query: 135 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 311
GID I +K +RT KS D+ TN+KFN ++L+RLFMS++N+ P
Sbjct: 2 GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61
Query: 312 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 491
+S+SRL M +E IAV+VGT+T+D+R+++IP M V AL TE+ARARI AGGE
Sbjct: 62 LSLSRLVEFMTG--KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGEC 119
Query: 492 LTFDQLALRAP 524
LTFDQLALRAP
Sbjct: 120 LTFDQLALRAP 130
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 119 bits (286), Expect = 1e-27
Identities = 63/131 (48%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = +3
Query: 135 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 311
GID I +K +RT KS D+ +N+ FN ++L+RLFMS++N+ P
Sbjct: 2 GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61
Query: 312 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 491
+S+SRL M ++ IAV+VGT+T+D+R+++IP M V AL TE+ARARI AGGE
Sbjct: 62 LSLSRLVEFMTG--KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGEC 119
Query: 492 LTFDQLALRAP 524
LTFDQLALRAP
Sbjct: 120 LTFDQLALRAP 130
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 96.3 bits (229), Expect = 1e-20
Identities = 48/80 (60%), Positives = 61/80 (76%)
Frame = +3
Query: 288 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 467
MS++N+ P+S+SRL R+M ++G IAV+VGTVT+DVR+ +P +TV AL TE ARAR
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 468 ILAAGGEILTFDQLALRAPT 527
I AGGE LTFDQLAL PT
Sbjct: 59 IHKAGGECLTFDQLALPCPT 78
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.48
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 434 CSSCYRKSSCTHFGCWRRNSYF 499
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 415 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 278
+LY LTS + VPT T + S + F RA D I ++ R
Sbjct: 347 VLYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 415 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 320
+LY LTS + VPT T + S + F RA D
Sbjct: 377 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 408
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 418 GILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 320
G+LY LTS + V T T K S V F RA D
Sbjct: 101 GVLYFLTSIIVVLTKTGEKGSPVDNFCLRAASD 133
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 415 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 320
+LY LTS + VPT T + S + F RA D
Sbjct: 440 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 471
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 398 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 523
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 261 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 368
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
kinase, putative
Length = 751
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 486 LLQQPKCVHELFR*HEEQPPS-SSVSCTVS-RHL*LSPLPRQSNPHELASSCGAPNETQR 313
++ P V +R +E P S V+C S RH+ + LP + L S+ G+ N QR
Sbjct: 45 IVDDPLYVFRSWRFDDETPCSWRGVTCDASSRHVTVLSLPSSNLTGTLPSNLGSLNSLQR 104
Query: 312 L 310
L
Sbjct: 105 L 105
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 5.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 434 CSSCYRKSSCTHFGCWR 484
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,486
Number of Sequences: 28952
Number of extensions: 239190
Number of successful extensions: 586
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -