Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n17
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    51   1e-07
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    41   1e-04
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   1.4  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   2.4  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    26   4.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   4.1  

>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +1

Query: 268 DIQRTLKFGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIK-KVFLDQFLFAPSFLCILL 444
           D+ RT+++ + G  +  P    W+  L+  + ++   + I  +V LDQF+FAP  +    
Sbjct: 88  DVHRTIRYAAYGLCLT-PIQFRWFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFFF 146

Query: 445 ISVAALQRKTWDIIKVDLKSNYFDVLTTNYYIW 543
           + +   + K+++ +K   + +Y+  L  NY +W
Sbjct: 147 LFMGITECKSYERLKSYFRKHYWPTLKANYILW 179


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +1

Query: 271 IQRTLKFGSIGFFIGGPALRTWYGVLN-KYVGSQGKIVTIKKVFLDQFLFAPSFLCILLI 447
           I+R L+F + GF I  P    W  +L+ K+   +G I  +K+V LDQ +FAP        
Sbjct: 66  IKRVLQFVTFGFAIS-PFQFRWLRLLSAKFPIEKGAINVVKRVLLDQAVFAPFGTAFFFS 124

Query: 448 SVAALQRKTWDIIKVDLKSNYFDVLTTNYYIW 543
            +   + K +      L++ ++  L  NY +W
Sbjct: 125 WMTLAEGKGFRGAYDKLQAVFWPTLKANYMVW 156


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 376 IVTIKKVFLDQFLFAPSFLCI--LLISVAALQRKTWDIIKVDLKSNYFDVLTT 528
           +VT+KK F D+++F P  + +  L+     ++ +   I+ V  ++  FD + T
Sbjct: 50  MVTLKKAFFDKYIFQPDSVLLTGLMTPTIRIRTQVKPILSV-FRNKIFDFIPT 101


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 83  LYPSFVYFIWFVDRSLNTLQKFKR 12
           LYPSF+  +W+V + L+T  K  R
Sbjct: 145 LYPSFMESVWWVFKELHTKGKVYR 168


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 334 WYGV-LNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQR 468
           W  V ++  + S G +  IKKVF +   F PS L +L  + AAL++
Sbjct: 74  WANVGIDPSIFSWGLVREIKKVFNNSDEFQPSPLTLLSKAYAALKK 119


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 141 KETISHFLFGFLLYLMNNSTIS*FCVFH-MVCRQELKYTSKV 19
           +E++S  L   L+Y+ N+S  S + V H +V + EL  T+ V
Sbjct: 446 RESVSQVLGVALIYVPNDSVFSMYKVLHSLVFQNELGLTNTV 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,212
Number of Sequences: 5004
Number of extensions: 44184
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)