Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n17
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133... 76 2e-14
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143... 69 2e-12
01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187 37 0.009
04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289... 29 1.8
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 5.5
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 27 9.7
01_05_0556 + 23236156-23236364,23236623-23236689,23236903-232371... 27 9.7
01_03_0196 - 13696056-13697448,13697676-13697713 27 9.7
>12_01_0180 -
1335825-1335980,1336584-1336670,1336767-1336859,
1336985-1337057,1337153-1337247,1337917-1338004,
1338135-1338424
Length = 293
Score = 76.2 bits (179), Expect = 2e-14
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Frame = +1
Query: 112 SKQKMTYRFF-KYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLK 288
+K +M +R +Y L + P +A+ + L TGD+I Q+ I+K D++RT
Sbjct: 85 AKGEMDWRLLLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKV--PKLDLKRTFV 142
Query: 289 FGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQR 468
F +G + GP L WY L+K V G I ++ LDQF+F+P F+ + + + L+
Sbjct: 143 FTFLGLVLVGPTLHVWYLYLSKLVMINGASGAIARLLLDQFIFSPIFIGVFMSLLVTLEG 202
Query: 469 KTWDIIKVDLKSNYFDVLTTNYYIW 543
K ++ LK + + N+ +W
Sbjct: 203 KP-SLVVPKLKQEWLSSVIANWQLW 226
>11_01_0180 -
1431758-1431838,1431975-1432061,1432180-1432230,
1432275-1432367,1432496-1432568,1432657-1432751,
1433428-1433515,1433647-1433936
Length = 285
Score = 68.9 bits (161), Expect = 2e-12
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +1
Query: 112 SKQKMTYRFF-KYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLK 288
+K M +R +Y L + P +A+ + L TGD+I Q+ I+K D++RT
Sbjct: 85 AKGAMDWRLLLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKV--PKLDLKRTFV 142
Query: 289 FGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQR 468
F +G + GP L WY L+K V G I ++ LDQF+F+P F+ + + + L+
Sbjct: 143 FTFLGLVLVGPTLHVWYLYLSKLVTINGASGAIARLLLDQFIFSPIFIGVFMSLLVTLEG 202
Query: 469 K 471
K
Sbjct: 203 K 203
>01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187
Length = 193
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +1
Query: 295 SIGFFIGGPALRTWYGVLNKYVGSQGKIVTIK----KVFLDQFLFAPSFLCILLISVAAL 462
S GF GP WY L++++ + + T K KV D LF P L + V
Sbjct: 48 SFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDLLLFFSYVGLA 107
Query: 463 QRKTWDIIKVDLKSNYFDVLTTNYYIW 543
++ + +K D+K ++ L IW
Sbjct: 108 SGRSVEQVKDDVKRDFIPALVLGGTIW 134
>04_04_1206 +
31727931-31728048,31728492-31728538,31728782-31728906,
31729067-31729133,31729221-31729283,31729429-31729498,
31729751-31729770,31729840-31729956,31730046-31730227,
31730586-31730640,31731604-31731697,31731791-31731900,
31733167-31733193,31733510-31733701
Length = 428
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 235 VIIEKTYWRDTDIQRTLKFGSIGFFIGGPAL 327
V I+ + R TD+ + L G+ G FIG P L
Sbjct: 185 VFIDSGFRRGTDVFKALALGASGVFIGRPVL 215
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +1
Query: 256 WRDTDIQRTLKFGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLC 435
W++TD++ +LK G + T + +V + V + +D+ L +
Sbjct: 269 WKETDVEESLKVSLEGTKMAYDLATTALHKVGAWVDKKESKVRDLEARVDELLREKEHIG 328
Query: 436 ILLISVAALQRKTWDIIKV 492
+LL S ALQ T +++KV
Sbjct: 329 VLLRS--ALQSNTSEVLKV 345
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 27.1 bits (57), Expect = 9.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +1
Query: 202 GLMATGDVISQVIIEKTYWR 261
G + TG+++S+++IE+ WR
Sbjct: 526 GKLTTGNIVSRILIERFNWR 545
>01_05_0556 +
23236156-23236364,23236623-23236689,23236903-23237108,
23237284-23237510,23237865-23237926
Length = 256
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 530 LVVKTSK*LDFKSTLIISHVFLC 462
++ + K LDF +TL I H+F+C
Sbjct: 168 VIERAKKCLDFAATLYIIHLFIC 190
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 27.1 bits (57), Expect = 9.7
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Frame = +1
Query: 223 VISQVIIEKTYWRDTDIQRTLKFGSIGF----FIGGPALRTWYGVLNKYVGSQGKIVTIK 390
+ISQ + T D T G F F+ G +R + ++K++G + I
Sbjct: 44 IISQAAPKLTKRSDKTAASTTSTGLADFSMLLFVTGVYIRMMHSTMSKFLGLETYITAAS 103
Query: 391 KVFLDQFL-------FAPSFLC--ILLISVAALQRKTWDIIKVDLKSNY 510
V D + + F+ ILL+ +AAL K WD ++ +Y
Sbjct: 104 LVMADYAVLLLINTRYIGVFIIPVILLVFIAALCTKLWDKSSPYIQQDY 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,245
Number of Sequences: 37544
Number of extensions: 235670
Number of successful extensions: 395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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