Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n17
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29145| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05) 44 6e-05
SB_10649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11) 28 4.3
SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5) 27 7.5
SB_53259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 27 9.9
SB_42946| Best HMM Match : Peptidase_M48 (HMM E-Value=0.082) 27 9.9
>SB_29145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +1
Query: 139 FKYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLKFGSIGFFIGG 318
++ YQ + P+ Q + G ++A GDVI+Q IE+ + D++RTLK G++G F+ G
Sbjct: 5 WRTYQRLMVSHPWTTQTVSVGVVVAFGDVITQQAIERK-GINHDVKRTLKMGAVGLFV-G 62
Query: 319 PALRTWYGVLNKYV--GSQGKIVTIKK 393
P +RTWY L+K V + K+ +KK
Sbjct: 63 PIIRTWYLTLDKLVVASRRPKLDALKK 89
>SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 49.2 bits (112), Expect = 2e-06
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = +1
Query: 130 YRFFKYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLKFGSIGFF 309
+R F +Y E L +RP L +A G L + GDVI+Q + + D R L+ G F
Sbjct: 288 FRPFAWYNERLTKRPLLTKAFTAGVLYSVGDVIAQRVSLRD--APLDRPRMLRAAIYGTF 345
Query: 310 IGGPALRTWYGVLN----KYVGSQGKIVTIKKVFLDQFLF-APSFLCI 438
I P + LN + + + +V KV+ DQF++ APS + I
Sbjct: 346 IVAPLAHLHFNFLNWLVVEKLAVRTLLVPFVKVYFDQFVYWAPSIVAI 393
>SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)
Length = 101
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +1
Query: 304 FFIGGPALRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQRKTWDI 483
F + GP + +Y L +V KK+F+D+ +F+P F + VA + K+
Sbjct: 2 FLVTGPLVHYFYNYLEHFVPRGVPFSKAKKLFIDRLIFSPPFYLLFFYIVAIFEGKSNKE 61
Query: 484 IKVDLKSNYFDVLTTNYYIW 543
+K+NY+ L + +W
Sbjct: 62 AIARIKANYWGALKMSLKVW 81
>SB_10649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.1 bits (62), Expect = 2.5
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +1
Query: 208 MATGDV-ISQVIIEKT--YWRDTDIQRTLKFGSIGFFIGGPALRTWYGVLNKYVGSQGKI 378
MA DV + Q+ +K +W D +I+R L+ +IG G + + V +
Sbjct: 1 MADEDVAVGQIRPKKRERHWTD-EIKRLLRLTNIGNVYGTYPTKKRCDQVRNNVLNFNSA 59
Query: 379 VTIKKVFLDQFLFAPSFLCILLISVAALQRKTWDIIKVDLKSNYFDVLTTNYYIW 543
T K F + P L ++ + + + ++IIKV+L+ +FD+ Y W
Sbjct: 60 KTTKFSFFSMEI-TPKKLAVIALCIQNIIFN-FEIIKVNLQLCFFDIYRALYLTW 112
>SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11)
Length = 1160
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 433 CILLISVAALQRKTWDIIKVDLKSNYFDVLTTNYYI 540
C++L + R T D + V +K F+ +T +Y+I
Sbjct: 648 CVVLYDLVFPTRGTTDYVSVSIKQGVFEDVTVSYWI 683
>SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5)
Length = 529
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 133 RFFKYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEKT 252
R +Y EF+R + L + + +G L D + V +E++
Sbjct: 209 RMTGFYDEFMRNKDLLFERVSSGKLQLDADTLLAVRLEQS 248
>SB_53259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 262 DTDIQRTLKFGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIKKV 396
D +++ G IGFF G P++ T G L+ Y + KI ++ +V
Sbjct: 81 DATNKKSKWMGKIGFFSGNPSVETVKGFLHIY---KNKICSLTQV 122
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 396 IFGSVPVCTIIFMYTAYKCSCITKK--DMGYN*SGF 497
+ G++PVCT+ F+Y SC+ K G N SGF
Sbjct: 142 VVGALPVCTMFFLY-----SCVVHKLWFTGENPSGF 172
>SB_42946| Best HMM Match : Peptidase_M48 (HMM E-Value=0.082)
Length = 460
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 127 TYRFFKYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEK-TYWRDTDIQRTLKFGSIG 303
TY+ Q+FLRR P + A+ G+ V + + Y R+ +G
Sbjct: 181 TYKLTMSTQKFLRRGPKFLDAVLKVGICGMSFVSYSITMRAIRYQREYSADEKAATIDLG 240
Query: 304 FFIGG 318
F +GG
Sbjct: 241 FALGG 245
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,244
Number of Sequences: 59808
Number of extensions: 306768
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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