Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n17
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    67   9e-12
Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical p...    27   6.6  
Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    27   8.7  
AF016447-7|AAG24007.2|  141|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
 Frame = +1

Query: 157 FLRRR----PYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLKFGSIGFFIGGPA 324
           F+RRR    P   Q    G +  +GD ++Q +     W   D  RT +F  +      P+
Sbjct: 6   FIRRRLATNPLSTQMCIAGTISGSGDCLAQYLSHNQEW---DRWRTARFSFLSSCFMAPS 62

Query: 325 LRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQ----RKTWDIIKV 492
           L  W+ +L K  G+   ++ +KK+ +DQ  F+P F   +L ++  LQ     K+WD++K 
Sbjct: 63  LFIWFRLLEKVKGNNKSLLLVKKLCIDQLCFSPCFNAAILFNLRLLQHQSAEKSWDLLKE 122

Query: 493 DLKSNYFDVLTTNYYIW 543
           D    +F++  T+  +W
Sbjct: 123 D----WFNIYATSLKVW 135


>Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 92  ITLLYPSFVYFIWFVDRSLNTLQKFKR 12
           I+ LY SFVY++W +   L  L + +R
Sbjct: 20  ISYLYTSFVYYLWLISSHLPHLPQPQR 46


>Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 92  ITLLYPSFVYFIWFVDRSLNTLQKFKR 12
           I+ LY SFVY++W +   L  L + +R
Sbjct: 20  ISYLYTSFVYYLWLISSHLPHLPQPQR 46


>U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical
           protein T26C11.4 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 186 GYSNRRPNGNRGCDFASNH*KNI-LEGYRYSEN 281
           G+SNR     RG D   NH +N+  +GY   +N
Sbjct: 298 GHSNRDSKARRGQDSGFNHRRNVDSDGYNGGQN 330


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -2

Query: 467  LCNA--ATLISSIHKNDGANRN*SKNTFLIVTIFPCDPTYLFKTPYQVRNAGPP 312
            LCN      IS  HK         K  F+  +  PC+PT   ++P ++ +   P
Sbjct: 1256 LCNRHLTNFISQAHKCQRCKMCLHKECFVFASSIPCNPTSPVRSPTRLHSPKRP 1309


>AF016447-7|AAG24007.2|  141|Caenorhabditis elegans Hypothetical
           protein C54F6.6 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -1

Query: 252 CFFNDYLRNHIPC--CH*ASCL 193
           CFF D++  HI C  C  A+C+
Sbjct: 110 CFFGDFICKHITCRNCEIATCI 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,333
Number of Sequences: 27780
Number of extensions: 245290
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)