BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10n16 (486 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 167 1e-42 SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 162 3e-41 SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.49 SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 0.65 SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 2.0 SPAC664.08c |||traub transciption factor family protein |Schizos... 25 4.6 SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 6.1 SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 8.0 SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 8.0 >SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|Schizosaccharomyces pombe|chr 1|||Manual Length = 252 Score = 167 bits (405), Expect = 1e-42 Identities = 76/128 (59%), Positives = 100/128 (78%) Frame = +3 Query: 93 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 272 +VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77 Query: 273 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 452 E SFRK +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+ Sbjct: 78 EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137 Query: 453 FCIGFTNK 476 F IGFT++ Sbjct: 138 FVIGFTSR 145 >SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|Schizosaccharomyces pombe|chr 1|||Manual Length = 252 Score = 162 bits (393), Expect = 3e-41 Identities = 74/128 (57%), Positives = 99/128 (77%) Frame = +3 Query: 93 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 272 +VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77 Query: 273 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 452 E +FRK +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RV Sbjct: 78 EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137 Query: 453 FCIGFTNK 476 F IGFT + Sbjct: 138 FVIGFTRR 145 >SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 308 Score = 28.7 bits (61), Expect = 0.49 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +3 Query: 228 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 401 VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143 Query: 402 IEANIDVKTT 431 +E + D++TT Sbjct: 144 LETSKDLETT 153 >SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces pombe|chr 2|||Manual Length = 1019 Score = 28.3 bits (60), Expect = 0.65 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +3 Query: 171 TLVNRTQG-TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 347 T VN+ TK+A KG +V++ L+ DAE + + F I EY++ N Sbjct: 82 TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137 Query: 348 MDLTTDKLRWMVKKWQTLIE 407 D T K + +W ++ E Sbjct: 138 KDKTQGK---FINEWDSIFE 154 >SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 522 Score = 26.6 bits (56), Expect = 2.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 395 LPFFNHPPELIGCEVHAVEVAEHITS 318 L H PEL+ C +VA+H+TS Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206 >SPAC664.08c |||traub transciption factor family protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 452 Score = 25.4 bits (53), Expect = 4.6 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +3 Query: 351 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 449 D T D +RWM K Q + N+D K + G +R Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384 >SPCC417.08 |tef3||translation elongation factor eEF3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1047 Score = 25.0 bits (52), Expect = 6.1 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -2 Query: 374 PELIGCEVHAVEVAEHITSL 315 PELI C H EV E I SL Sbjct: 216 PELINCIAHPEEVPETIHSL 235 >SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 580 Score = 24.6 bits (51), Expect = 8.0 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -3 Query: 370 SLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETS 233 +LS++ S KLQ +R + +A+NL D+ A+ + +S S Sbjct: 446 ALSLLLSQDEKLQHDVRSASSAALNLPRDTDIKATPNLSQSGNINS 491 >SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pombe|chr 2|||Manual Length = 392 Score = 24.6 bits (51), Expect = 8.0 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 212 FRSNFRSLGTVDKRGADLPLAEH 144 F + RSL +VD LPL EH Sbjct: 44 FSRSHRSLSSVDVSSPSLPLREH 66 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,031,083 Number of Sequences: 5004 Number of extensions: 40654 Number of successful extensions: 111 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 188065158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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