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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n16
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   167   1e-42
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   162   3e-41
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.49 
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    28   0.65 
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   2.0  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   4.6  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   6.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.0  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   8.0  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  167 bits (405), Expect = 1e-42
 Identities = 76/128 (59%), Positives = 100/128 (78%)
 Frame = +3

Query: 93  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 272
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 273 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 452
           E SFRK +L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137

Query: 453 FCIGFTNK 476
           F IGFT++
Sbjct: 138 FVIGFTSR 145


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  162 bits (393), Expect = 3e-41
 Identities = 74/128 (57%), Positives = 99/128 (77%)
 Frame = +3

Query: 93  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 272
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 273 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 452
           E +FRK +L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RV
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137

Query: 453 FCIGFTNK 476
           F IGFT +
Sbjct: 138 FVIGFTRR 145


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 228 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 401
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 402 IEANIDVKTT 431
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 171 TLVNRTQG-TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 347
           T VN+    TK+A    KG   +V++  L+   DAE + + F  I EY++  N       
Sbjct: 82  TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137

Query: 348 MDLTTDKLRWMVKKWQTLIE 407
            D T  K    + +W ++ E
Sbjct: 138 KDKTQGK---FINEWDSIFE 154


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 395 LPFFNHPPELIGCEVHAVEVAEHITS 318
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 351 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 449
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 374 PELIGCEVHAVEVAEHITSL 315
           PELI C  H  EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 370 SLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETS 233
           +LS++ S   KLQ  +R  + +A+NL    D+ A+ +  +S    S
Sbjct: 446 ALSLLLSQDEKLQHDVRSASSAALNLPRDTDIKATPNLSQSGNINS 491


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 212 FRSNFRSLGTVDKRGADLPLAEH 144
           F  + RSL +VD     LPL EH
Sbjct: 44  FSRSHRSLSSVDVSSPSLPLREH 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,083
Number of Sequences: 5004
Number of extensions: 40654
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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