Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n16
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          51   6e-07
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   2.0  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)                       27   6.2  
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)                        27   6.2  
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)                 27   6.2  
SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)                    27   6.2  
SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)                  27   8.2  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   8.2  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +3

Query: 396 TLIEANIDVKTTDGYVLRVFCIGFTNK 476
           TLIEA +DVKTTDGY+LR+FCIGFT +
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKR 28


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 289 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 110
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 228  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 317
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 415  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 251
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 93  IVDPFTRKDWYDVKAPSMFSKRQ 161
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 182 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 36
           VD +       + +++ D+ PIF  + V  LLL T FT L+   +  DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207


>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 331 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIF 197
           S LR   Y AI + L  D   +       ++T    P+NP++A+F
Sbjct: 331 SVLRAAMYGAIAVLLYPDPEITSKLGTRPQDTFPNTPWNPADAVF 375


>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 354 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 458
           L T +   +  +WQT +  N+ VK TDG +    C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176


>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
          Length = 427

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 177 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF--RKFRLIAEYVQGRNVLCNFHGM 350
           + +  G  +A +     + +  +AD +++ D ER+   + FRL   Y     +L   HG+
Sbjct: 181 LTKDSGLMVALKSQSSSICKFKMADSESE-DQERTIITQLFRLGHSYDDIVGLLSKCHGI 239

Query: 351 DLTTDKLRWMVKKW 392
           +++   L+  +K W
Sbjct: 240 NISVRTLKRRLKDW 253


>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
          Length = 340

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 234 EVSLADLQADTDAERS--FRKFRLIAEYV-QGRNVLCNFHGMDLTTDKLRWMVKKWQTL 401
           E+  A L+ D D+  +  F +F  +A  + QG+ ++ NF    + TD + + V  W TL
Sbjct: 186 EIKEAMLEVDVDSSGTVDFFEFLCVARLITQGKALVNNFQLSIVQTDGITFDVFDWSTL 244


>SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)
          Length = 592

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 281 RPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDI-VPIFASE 105
           RP  ++V    +    ++ S  S  SN   +      G+ +P+A  R +LDI VP+ A++
Sbjct: 512 RPVTITVIDMATNPYKDDKSASSVESNVMEIDLASDSGSRIPVAGLREALDIRVPVNAAQ 571

Query: 104 WVDNL 90
             + +
Sbjct: 572 QANQI 576


>SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)
          Length = 624

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 176 KRGADLPLAEHRRSLDIVPIFASEWVDN 93
           K+GA + LA  RR+LD+V    ++ +D+
Sbjct: 1   KKGAPICLAARRRNLDVVEFLLTQQLDH 28


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 233 ENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDI-VPIFASEWVDNL 90
           ++ S  S  SN   +      G+ +P+A  R +LDI VP+ A++  + +
Sbjct: 151 DDKSASSVESNVMEIDLASDSGSRIPVAGLREALDIRVPVNAAQQANQI 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,024
Number of Sequences: 59808
Number of extensions: 319585
Number of successful extensions: 823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)