Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n16
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.99 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.99 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 104 WVDNLLLNTFFTALRQAFIF 45
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 104 WVDNLLLNTFFTALRQAFIF 45
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 131 QGSVYVQQEASRHH--ACQPYPGNENCFG 211
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122



 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 435 HRLSSHQCWLR*ES 394
           H LS H+C++R E+
Sbjct: 554 HNLSLHKCFMRVEN 567


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 295 LNLRKDLSASVSACRSARE 239
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +3

Query: 306 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANID 419
           +Y++  N+    +GM +  DK+   + +W+  + +N++
Sbjct: 45  DYIEENNMP---NGMQIWNDKVFITIPRWKNGVPSNLN 79


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 113 ASEWVDNLLLNTFFTALRQAFIFPDRHVQ 27
           A  W D +LLN    A+    + P+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 113 ASEWVDNLLLNTFFTALRQAFIFPDRHVQ 27
           A  W D +LLN    A+    + P+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 113 ASEWVDNLLLNTFFTALRQAFIFPDRHVQ 27
           A  W D +LLN    A+    + P+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,226
Number of Sequences: 438
Number of extensions: 2768
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)