Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n15
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.42
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.96
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 2.9
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 2.9
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe... 26 2.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 2.9
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 3.9
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.1
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 6.8
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 6.8
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 25 6.8
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 6.8
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 25 6.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 6.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 6.8
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 25 9.0
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 9.0
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 29.1 bits (62), Expect = 0.42
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 257 NTTYTMSYLDAKSDCRRQPILPTACSNPVSASKRFETQTIYKNSYLPATATIPT 418
N YT S + S + T+ S P++AS + +I NS +P T+ +PT
Sbjct: 71 NYPYTGSKSLSSSSILSNSTISTSSSTPITASVP-TSSSILSNSTIPTTSPVPT 123
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 0.96
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Frame = +2
Query: 236 PCQKLDGNTTYTMSYLDAKSDCRRQPILPTACSN---PVSASKRFETQTIYKNSYLPATA 406
P + +Y+ +Y + P LPTA +N PV +R + Y + +PA
Sbjct: 153 PPPSYSSSGSYSQTYQSNANYTASSP-LPTASANAPLPVPPPRRVSQNSSYASGSVPAAT 211
Query: 407 TI---------PTPVKPSPNIIASTAQMEGDTVQKLSYLPNPV 508
P P P P +A+ V + +P PV
Sbjct: 212 AASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPPV 254
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 207 RGLVRDNMRSLVKSWTEIRHTQ*VTWTRKATVVDNPSYRLLAPTLSPLRR 356
+GL +DN++SL + W +R+ + AT +NP + ++ L ++R
Sbjct: 12 KGLTKDNIQSLYQQWQVMRN-------QGATEENNPEFAQISSILRMVQR 54
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 237 LVKSWTEIRHTQ*VTWTRKATVVDNPSYRLLAPTLSPLRRDLKR 368
L S +++R+T + R V+ NP + L PTL D R
Sbjct: 1531 LTDSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTR 1574
>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 224 QYEKPCQKLDGNTTYTMS-YLDAKS 295
QY+K ++LD TTY MS YL ++
Sbjct: 54 QYKKEIEQLDSKTTYLMSLYLSPET 78
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 314 WVVDDSRFSRPSNSLCMSYFRPTFDKASHIVP 219
W VD S + NS+ + +PTF K +VP
Sbjct: 177 WSVDWSALTFKRNSVTKADVKPTFGKVIDVVP 208
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.9
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = +2
Query: 257 NTTYTMSYLDAKSDCRRQ--PILPT-ACSNPVSASKRFETQTIYKNSYLPATATIPTPVK 427
N YT+ +D + P PT A P S SKR E K++Y +
Sbjct: 279 NNDYTVGKVDTLKVTKEDEDPTTPTNAIPIPSSMSKRDEALENDKDNYFDDLHPLNISTS 338
Query: 428 PSPNIIASTAQMEGDTVQKL-SYLPN 502
P P+ ++ + + DT L ++L N
Sbjct: 339 PQPSPLSFSEIPQSDTRNALENFLDN 364
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 278 NSLCMSYFRPTFDK 237
N LC+S+FR FDK
Sbjct: 12 NKLCVSFFRSKFDK 25
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 308 QPILPTACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPNI 442
+P+ SN S S T T S LP+ PV+PSP+I
Sbjct: 313 EPMTSNLTSN--SGSMTNSTSTDLPTSNLPSQNAPARPVEPSPSI 355
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 142 CYSFTVEVNREHLLSNEERNSTVGL*GTI*EALSKVGRKYDIHNELLGREKRLSSTTHL 318
C+ +E N + S E+ G+ I +K+ KY + NELL REKR S L
Sbjct: 433 CFQAGIEENDYTMFSYEDLEHEFGITANI--IANKI--KY-LENELLEREKRTLSKQEL 486
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 320 PTACSNPVSASKRFETQTIYK-NSYL 394
P ACSNP+ KR E + +SYL
Sbjct: 259 PYACSNPLLVKKRMERNPFRRQHSYL 284
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 365 TQTIYKNSYLPATATIPTPVKPSPNIIAST 454
T+TI + YLP + T P P P+ I+ST
Sbjct: 396 TETI--SQYLPPSETSPIPKTPNFKFISST 423
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -1
Query: 239 KASHIVPYKPTVLF-LSSLLNKCSR 168
+AS ++PYKP+ LF L S +N+ R
Sbjct: 14 RASRLMPYKPSFLFSLISNVNEYER 38
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 259 YDIHNELLGREKRLSSTTHLT 321
YDI + LLG+EK+ S T T
Sbjct: 170 YDILSPLLGKEKQKSHVTRFT 190
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 148 SFTVEVNREHLLSNEERNSTV 210
SFT+E NRE+ S+ + +STV
Sbjct: 330 SFTIEQNRENEKSSTKNDSTV 350
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 404 PWPVNSCSYK*SAFQIS-SKRRQGWSKQSVRWVVDDSRFSRP 282
P P+ S +Y A +I+ S R W++ S + SRFSRP
Sbjct: 167 PSPLFSSAY---ATRINGSLRNDKWNRSSFSEALSSSRFSRP 205
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 288 ASK*LIVYVVFPSNF*QGFSYCPLQAHGTVSFFITQQMFTID 163
AS ++ + PSNF + S CP + S+F + D
Sbjct: 70 ASATTVINLYLPSNFQEDMSGCPNRNDTDASYFYENDIIDYD 111
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 311 VVDDSRFSRPSNSLCMSYF 255
++DD RF N+LC S+F
Sbjct: 361 IMDDFRFMHYWNNLCQSFF 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,315
Number of Sequences: 5004
Number of extensions: 44511
Number of successful extensions: 138
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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