Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n15
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 31 0.42
01_06_0209 - 27549615-27550246,27550358-27550452,27553290-275535... 30 1.3
04_03_0083 + 10878487-10878714,10878781-10879223,10879267-108794... 29 1.7
07_03_0852 - 22020159-22021388 28 3.9
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 5.2
09_02_0012 + 2965797-2966714,2966756-2967011,2967051-2967147,296... 27 6.8
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 27 6.8
09_06_0072 - 20682424-20682870,20683928-20684854 27 9.0
09_04_0568 + 18591757-18592251 27 9.0
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 27 9.0
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 27 9.0
01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498 27 9.0
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 27 9.0
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 194 KETVPWACKGQYEKPCQKLDGNTTYTMSYLDAK 292
KETV W + + E C + +G Y YLDAK
Sbjct: 29 KETVKWRRQYRPESICWEYEGRRAYIADYLDAK 61
>01_06_0209 -
27549615-27550246,27550358-27550452,27553290-27553507,
27553590-27553757
Length = 370
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 403 GNHTDAXEAVAKHHRFDSSNGRGHG 477
GN+ A A A+HH D G GHG
Sbjct: 289 GNNIKASNAAAEHHHNDGVGGGGHG 313
>04_03_0083 +
10878487-10878714,10878781-10879223,10879267-10879423,
10879573-10880433
Length = 562
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 323 TACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPNI 442
TA + +S +KR ETQ + +PA T P++P P++
Sbjct: 271 TAITITLSCNKRIETQLAQLAALVPAKETGRIPMQPEPSL 310
>07_03_0852 - 22020159-22021388
Length = 409
Score = 28.3 bits (60), Expect = 3.9
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = -1
Query: 494 GTTTFAPCPLPFELSKR*CLATASXASVWLPWPVNSCSYK*SAFQISSKRRQGWSKQSVR 315
G T FAP + + C+A + S + W + C+ K AF SS Q + SV
Sbjct: 172 GDTFFAP------IGEEECVAAVAETSFKVIW-IAECADKLVAFVFSSVTGQWRATASVC 224
Query: 314 WVVDDSRFSRPSNSLCMSYFRPTF 243
W FSRP+ C S R ++
Sbjct: 225 WGDLSPAFSRPA---CRSMSRRSY 245
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 323 TACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPNI 442
+A N +S +K ETQ S +PA T PV+P +I
Sbjct: 310 SAFQNQLSFNKMIETQLAQLASLVPANETGRIPVQPDSSI 349
>09_02_0012 +
2965797-2966714,2966756-2967011,2967051-2967147,
2967175-2967634,2967804-2968117,2968220-2968235
Length = 686
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 323 TACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPNI 442
+A N +S +K ETQ S +PA + P +P P+I
Sbjct: 342 SAFQNQMSFNKMIETQLAQLESLVPANESGRIPGQPDPSI 381
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 323 TACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPNI--IASTAQMEGDTVQKLSYL 496
+A N +S +K ETQ S +PA + P +P +I + + EG + + Y
Sbjct: 289 SAFQNQLSFNKMIETQLAQLASLVPANESRRIPGQPDSSIETVKAIITREGKSTRDPPY- 347
Query: 497 PNP 505
PNP
Sbjct: 348 PNP 350
>09_06_0072 - 20682424-20682870,20683928-20684854
Length = 457
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 395 PATATIPTPVKPSPNIIASTAQM 463
PA A PTP P P I+ S A +
Sbjct: 126 PAPAPAPTPTPPPPGILESLAML 148
>09_04_0568 + 18591757-18592251
Length = 164
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 TACSNPVSASKRFETQTIYKNSYLPATATIPTPVK-PSPNIIASTAQMEGDTVQKLSYLP 499
T C+N TQ + +N +L ATA+ +P SP + + V+ + LP
Sbjct: 20 TLCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPVLDKQPPRPAAPLVEPQAPLP 79
Query: 500 NPV 508
PV
Sbjct: 80 PPV 82
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 VSASKRFETQTIYKNSYLPATATIPTPVKPSPNI-IASTAQMEGDTVQKLSYLPNP 505
+S +K ETQ SY+PA T P +P ++ GD + PNP
Sbjct: 253 LSFNKMIETQLAQLTSYVPANETGRIPGQPDSSVENVKAITTRGDKSTRDPPYPNP 308
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 406 NHTDAXEAVAKHHRFDSSNGRGHGAKVVVPTEPGV 510
N TDA EAV + D +G + VP PGV
Sbjct: 1259 NRTDALEAVRELFSGDGQTKKGRKGQNEVPLPPGV 1293
>01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498
Length = 401
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 323 TACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPNI--IASTAQMEGDTVQKLSYL 496
+A N +S +K ETQ S +PA T P +P ++ + + G + + Y
Sbjct: 133 SAFQNQLSFNKMIETQLAQLASLVPANETGRIPGQPDSSVENVKAITMRGGKSTRDPPY- 191
Query: 497 PNPVCVT 517
PNP T
Sbjct: 192 PNPAGAT 198
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 326 ACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSP 436
A S P S+ F S+LP++A P P P P
Sbjct: 101 AVSLPTSSGPHFLNGVATPTSHLPSSAAAPPPPPPPP 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,769
Number of Sequences: 37544
Number of extensions: 294659
Number of successful extensions: 917
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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