Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n15
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   29   3.0  
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             28   4.0  
SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)                     28   5.3  
SB_14411| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                 27   9.3  
SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)                 27   9.3  
SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 161 KSIVNIC*VMKKETVPWACK 220
           K I NIC ++  E++PWAC+
Sbjct: 127 KEITNICTIICFESIPWACR 146


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 350  SKRFETQTIYKNSYLPATATIPTPVKPSPNIIASTAQ 460
            S+R  T+T  ++S LP TA+ P     SP+ ++S  Q
Sbjct: 1189 SRRRRTETEPRDSSLPCTASTPVSHDQSPSTLSSIQQ 1225


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 44  SYGINGVFITVY*FFITEVTIGNNIYSSDPKHDVIPSP 157
           S+  NG F+T     +   ++ NN  S    HD +PSP
Sbjct: 99  SFSHNGTFLTSDLRMVENTSVCNNATSPRSTHDPVPSP 136


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -1

Query: 401 WPVNSCSYK*SAFQISSKRRQGWSKQSVRWVVDDSRFSRPSNSLCMSYFRPTF--DKASH 228
           W + +CS K       S+ RQ W+ + V+ V++   F + S  LC + +   F  +K + 
Sbjct: 402 WTMLACSRK-----FFSRARQTWTIEIVKQVLNGGEFDQESPLLCRAVYLDAFSCEKRAG 456

Query: 227 IVPYK 213
           + P +
Sbjct: 457 MTPMR 461


>SB_52513| Best HMM Match : MAGP (HMM E-Value=0.12)
          Length = 1020

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 302 RRQPILPTACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSPN 439
           R  PI P+  + P+  S    + T  K S  P+T T  TP+KPSPN
Sbjct: 333 RTTPIKPSPSTTPIKPSP---STTPIKPS--PST-TSTTPIKPSPN 372


>SB_14411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 243 KSWTEIRHTQ*VTWTRKATVVDNPSYRLLAPTLSP 347
           KSW++       T T  A     PS+R LAP LSP
Sbjct: 46  KSWSQCGLLSCPTTTSPAKRRKTPSWRTLAPALSP 80


>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 943

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 335 NPVSASKRFETQTIYKNSYLPATATIPTPVKP 430
           N VS     +  T++ N Y+P   T P P  P
Sbjct: 863 NEVSGGAHEKKTTLHANLYIPKPTTTPPPTAP 894


>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
          Length = 714

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 10  LGAGLYVNTCTILRNKRCFHYCVL 81
           +G G+Y     IL+NK C+  C L
Sbjct: 289 VGLGIYFTANRILKNKECYILCCL 312


>SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 250 GRKYDIHNELLGREKRLSSTTHLTDCLLQPCLRFEEI 360
           G+ Y   +ELLGR  R      +    L  C+RF+E+
Sbjct: 73  GKLYYKFDELLGRRVRRQIHQAIEHIKLHTCIRFQEV 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,415
Number of Sequences: 59808
Number of extensions: 355441
Number of successful extensions: 970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)