Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n15
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    33   0.093
AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical ...    31   0.37 
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   1.5  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    27   6.1  
Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   8.0  

>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 197 ETVPWACKGQYEKPCQKLDGNTTYTMSYLDAKSDCRRQPILPTACSNPVSASKRFETQTI 376
           ETVP A +   + PC      TT T +   A   C   P  P A + P +A+   +T   
Sbjct: 274 ETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCVYTP-APPATAPPATATPATQTPRT 332

Query: 377 YKNSYLPATATIP---TPVKPSP 436
           Y  +  P   T+P   T + P P
Sbjct: 333 YSTT-TPIKTTVPQQWTTLPPGP 354


>AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical
           protein Y48A6B.5 protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 215 CKGQYEKPCQKLDGNTTYTMSYLDAKSDCRRQPILPTACSNPVSA 349
           C+G++ +P QK+D NT   +S    K++ R+   +P  C+ P  +
Sbjct: 164 CRGRFGEPMQKVDWNT--VVSTRTGKTEPRKMAKVPQKCTLPTQS 206


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 338 PVSASKRFETQTIYKNSYLPATATIPTPVKPSPNI--IASTAQMEGDTVQKLSYLPNPVC 511
           P  ASK+ E+ +   +   PA  + P  + P P    +AS++    D  +K +  P P  
Sbjct: 455 PKPASKKAESSSDSSDDEKPAAKSTPAKITPKPTAKKVASSSSDSSDDEKKPAAKPTPAN 514

Query: 512 VT 517
            T
Sbjct: 515 AT 516


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = -2

Query: 466 FHLSCRSDDVWRRLHXRRYGCRGR*IAV-LINSLRFKSLR-----SGDRVGASSR*DGLS 305
           +H  C+ DD+W ++H   +G +   + V +IN L  + ++       D+    ++ + +S
Sbjct: 334 YHDDCKCDDIWNQMHKISFGNQVEKLFVKVINELEDREIKDCPLTDMDKQNIQNKVEEVS 393

Query: 304 TTVAFRVQVTHC 269
               FR+    C
Sbjct: 394 KHQIFRIYTAFC 405


>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
           protein R107.6 protein.
          Length = 1020

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 253 RKYDIHNE-LLGREKRLSSTTHLTDCL 330
           R   +H E ++GRE+ LS    LTDCL
Sbjct: 68  RSMVVHGEDVIGREQLLSQLVRLTDCL 94


>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 269 TMSY-LDAKSDCRRQPILPTACSNPVSASKRFETQTIYKNSYLPATATIPTP 421
           T+ Y + A S    QPIL T  S+         T T  K + L  TAT  TP
Sbjct: 459 TLYYEITAASGTTTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTP 510


>Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical
           protein C44H9.2 protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 89  ITEVTIGNNI----YSSDPKHDVIPSPWKSIVNIC*VMKKETVPWA 214
           I++  +GN+I    Y S+P  +++P   ++++++  +MK   V WA
Sbjct: 549 ISQKIVGNSIKFLRYVSEPNWNLLPDSSRTVIDMPVLMKHYFVGWA 594


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = +2

Query: 257 NTTYTMSYLDAKSDCRRQPILPTACSNPVSASKRFETQTIYKNSYLPATATIPTPVKPSP 436
           +TT T S     +    Q   PT+    VS+S    + T+  ++  P+T  +PT     P
Sbjct: 439 STTITPSTPKVSTLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQP 498

Query: 437 NIIASTAQMEGDTV 478
               S       TV
Sbjct: 499 TPSTSNPTTPKSTV 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,836
Number of Sequences: 27780
Number of extensions: 256425
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)