Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n15
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29385.1 68416.m03692 hypothetical protein                          28   3.3  
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t...    28   4.3  
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch...    28   4.3  
At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha ch...    28   4.3  
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin...    27   5.7  
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin...    27   5.7  
At5g61360.1 68418.m07699 expressed protein                             27   7.6  

>At3g29385.1 68416.m03692 hypothetical protein
          Length = 218

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 235 ALSKVGRKYDIHNELLGREKRLSSTTHLTDCLLQPCLRF 351
           A + +  K D +  +   ++RL S+THL   LLQP   F
Sbjct: 43  ATNTLSEKVDTNEAISPSKRRLLSSTHLMQQLLQPAPTF 81


>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 182

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +2

Query: 281 LDAKSDCRRQPI-LPTACSNPVSASKRFETQTIYKNSYLPATA----TIPTPVKPSPNI 442
           L A ++CR  P   P    NP   S +  T ++  + Y+P  +    ++PTP  PSP++
Sbjct: 22  LTAGTNCRCNPSPKPRPLPNPKVPSPKVPTPSV-PSPYVPTPSVPSPSVPTPSVPSPSV 79


>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
           chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
           1 (MCCA) nearly identical to SP|Q42523
           Methylcrotonyl-CoA carboxylase alpha chain,
           mitochondrial precursor (EC 6.4.1.4)
           (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           alpha subunit) {Arabidopsis thaliana}
          Length = 734

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 317 LPTACSNPVSASKRFETQTIYKN---SYLPATATIP--TPVKPSPNIIASTAQMEGDTV 478
           LP + S    +   FE +   +N    +LPAT  +    PV  SP++   T   +GDTV
Sbjct: 358 LPLSQSEVPMSGHAFEARIYAENVPKGFLPATGVLNHYRPVAVSPSVRVETGVEQGDTV 416


>At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha
           chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
           1 (MCCA) nearly identical to SP|Q42523
           Methylcrotonyl-CoA carboxylase alpha chain,
           mitochondrial precursor (EC 6.4.1.4)
           (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           alpha subunit) {Arabidopsis thaliana}
          Length = 714

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 317 LPTACSNPVSASKRFETQTIYKN---SYLPATATIP--TPVKPSPNIIASTAQMEGDTV 478
           LP + S    +   FE +   +N    +LPAT  +    PV  SP++   T   +GDTV
Sbjct: 338 LPLSQSEVPMSGHAFEARIYAENVPKGFLPATGVLNHYRPVAVSPSVRVETGVEQGDTV 396


>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 400 HGNHTDAXEAVAKHHRFDSSNGRGHG 477
           H NH+        HH  D  +G  HG
Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHG 223


>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 400 HGNHTDAXEAVAKHHRFDSSNGRGHG 477
           H NH+        HH  D  +G  HG
Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHG 223


>At5g61360.1 68418.m07699 expressed protein 
          Length = 210

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 SDPKHDVIPSPWKSIVNI 178
           S P  DV  SPWKS++ I
Sbjct: 91  SQPSEDVGKSPWKSVIEI 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,460
Number of Sequences: 28952
Number of extensions: 236271
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)