Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n11
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0238 - 21791139-21791264,21791862-21791948,21792713-217927...    93   2e-19
01_01_0202 + 1753394-1753667,1753934-1753977,1754105-1754152,175...    91   9e-19
01_01_1185 + 9437432-9437678,9437800-9437902,9438121-9438151,943...    28   6.9  

>09_06_0238 -
           21791139-21791264,21791862-21791948,21792713-21792766,
           21793199-21793261,21793363-21793410,21793626-21793688
          Length = 146

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 48/113 (42%), Positives = 65/113 (57%)
 Frame = +2

Query: 251 TVKVVVKNVPDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQ 430
           T  V + N+  +      ND   +T ++  DLS+LF WN KQ+F+++ AEY TP N LNQ
Sbjct: 17  TASVKILNINWFQKEANGNDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYETPQNALNQ 76

Query: 431 VVLWDKIILRGENAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAG 589
           V LWD II   E+A       N KY F D G+ LKG  +  LT+ W+I+P  G
Sbjct: 77  VSLWDGIIPSKEHAKFLIHTTN-KYRFIDQGSNLKG-KDFNLTMHWHIMPKTG 127


>01_01_0202 +
           1753394-1753667,1753934-1753977,1754105-1754152,
           1754940-1755002,1755460-1755513,1756073-1756159,
           1756253-1756381
          Length = 232

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 46/123 (37%), Positives = 71/123 (57%)
 Frame = +2

Query: 227 YRTGAQMNTVKVVVKNVPDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 406
           ++ G Q+  +  +V  +  +      ND   LTF+L  +L +LF W+ KQ+F++LTAEY 
Sbjct: 94  WKVGCQILILSTMVTKINRFHKQLNGNDKVTLTFNLSANLESLFTWSTKQVFVFLTAEYE 153

Query: 407 TPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNA 586
              N LNQV LWD II   + A L  + + +KY   D G+ L+G   V L L W+++P A
Sbjct: 154 NSKNSLNQVSLWDHIIPDKDKANLQVE-VKSKYPLIDQGSSLRG-KKVQLVLHWHVMPKA 211

Query: 587 GLL 595
           G++
Sbjct: 212 GVM 214


>01_01_1185 +
           9437432-9437678,9437800-9437902,9438121-9438151,
           9438268-9438363
          Length = 158

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +2

Query: 272 NVPDYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKI 451
           NVP   A     ++ F +F LK     +  WNV  +  +L  +      +  ++ LW+  
Sbjct: 4   NVPVMSACDREREVSFASFGLKEQRQRMCLWNVPMMECFLWVQ-----EQRQRMCLWNVP 58

Query: 452 ILRGENAV 475
           I+  E  V
Sbjct: 59  IIEREVGV 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,131
Number of Sequences: 37544
Number of extensions: 262304
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)