Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n11
         (620 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070615-1|AAL48086.1|  179|Drosophila melanogaster RE71708p pro...   262   4e-70
AE014297-3505|AAF56264.1|  179|Drosophila melanogaster CG5677-PA...   262   4e-70

>AY070615-1|AAL48086.1|  179|Drosophila melanogaster RE71708p
           protein.
          Length = 179

 Score =  262 bits (641), Expect = 4e-70
 Identities = 119/165 (72%), Positives = 141/165 (85%)
 Frame = +2

Query: 125 MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVPDYGASRER 304
           M++VLTRGNA + YTLSV              +DYRT A +NTV+V+VKNVPDYGASRE+
Sbjct: 1   MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKNVPDYGASREK 60

Query: 305 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 484
           +DLGF+TFDL+T+L+ +FNWNVKQLFLYLTAEY TP+N+LNQVVLWDKIILRG+NAVLDF
Sbjct: 61  HDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDF 120

Query: 485 KNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQ 619
           KNMNTKYYFWDDGNGLK + NV+L LSWNIIPNAGLLP++QA G+
Sbjct: 121 KNMNTKYYFWDDGNGLKDNRNVSLYLSWNIIPNAGLLPSVQATGK 165


>AE014297-3505|AAF56264.1|  179|Drosophila melanogaster CG5677-PA
           protein.
          Length = 179

 Score =  262 bits (641), Expect = 4e-70
 Identities = 119/165 (72%), Positives = 141/165 (85%)
 Frame = +2

Query: 125 MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVPDYGASRER 304
           M++VLTRGNA + YTLSV              +DYRT A +NTV+V+VKNVPDYGASRE+
Sbjct: 1   MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKNVPDYGASREK 60

Query: 305 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 484
           +DLGF+TFDL+T+L+ +FNWNVKQLFLYLTAEY TP+N+LNQVVLWDKIILRG+NAVLDF
Sbjct: 61  HDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDF 120

Query: 485 KNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQ 619
           KNMNTKYYFWDDGNGLK + NV+L LSWNIIPNAGLLP++QA G+
Sbjct: 121 KNMNTKYYFWDDGNGLKDNRNVSLYLSWNIIPNAGLLPSVQATGK 165


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,360,453
Number of Sequences: 53049
Number of extensions: 477314
Number of successful extensions: 923
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)