Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n10
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   317   5e-87
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414...    29   2.3  
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    29   4.1  
08_02_0478 + 17621678-17623768                                         28   5.4  
08_01_0346 - 3063440-3064189                                           28   7.1  
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989...    28   7.1  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  317 bits (778), Expect = 5e-87
 Identities = 156/183 (85%), Positives = 166/183 (90%)
 Frame = +3

Query: 72  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 251
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7   ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66

Query: 252 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 431
           RIRELTSVVQKRFN PE  VELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67  RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126

Query: 432 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 611
           F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186

Query: 612 KVK 620
           KVK
Sbjct: 187 KVK 189


>05_04_0322 +
           20239793-20240127,20240176-20240728,20241317-20241425,
           20244456-20244723,20244943-20245197,20245594-20246539
          Length = 821

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 329 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 424
           G  SWS RY+    ISK   Y   RC  C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = -1

Query: 602 YSLPEKHMSGSSVDVVIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETEN 423
           + L +  + GS  +++   V R D +++Y+    G ++     +NN +++G   HD   N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798

Query: 422 TIASTTYSETSDKLVS 375
            I         ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814


>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 510 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 605
           K + GL+IHSG   ND+V+++   +  + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 363 AESLRYKLIGGLAVRRACYGVLR 431
           A S    L+GG A   ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243


>01_07_0132 -
           41298184-41298558,41298648-41298729,41298850-41298977,
           41299059-41299157,41299279-41299434,41300709-41300783,
           41301962-41302137,41303210-41303252,41303336-41303503,
           41303584-41303731,41306316-41306587
          Length = 573

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 399 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 578
           A R A  G++  + + G  G     SG+ RGQ  +++  ++G +        +Y++ A  
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531

Query: 579 HVL 587
            +L
Sbjct: 532 EIL 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,359,354
Number of Sequences: 37544
Number of extensions: 390829
Number of successful extensions: 1039
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)