Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n09
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ...    28   6.1  
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ...    28   6.1  
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ...    28   6.1  
At2g21530.1 68415.m02562 forkhead-associated domain-containing p...    28   6.1  
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr...    23   6.5  
At5g29000.2 68418.m03590 myb family transcription factor contain...    27   8.1  
At5g29000.1 68418.m03589 myb family transcription factor contain...    27   8.1  
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long...    27   8.1  

>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 453

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -2

Query: 572 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVPVYN 405
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR V + N
Sbjct: 112 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRN 167


>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -2

Query: 572 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVPVYN 405
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR V + N
Sbjct: 126 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRN 181


>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -2

Query: 572 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVPVYN 405
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR V + N
Sbjct: 126 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRN 181


>At2g21530.1 68415.m02562 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 209

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -1

Query: 327 SDVFCI--TINMNSLSGAMSISCLR 259
           S +FC     N N+L+GA+S++CLR
Sbjct: 21  SSLFCFYGNSNRNNLNGAVSVNCLR 45


>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
           (RPOMT) identical to SP|P92969 DNA-directed RNA
           polymerase, mitochondrial precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 976

 Score = 23.0 bits (47), Expect(2) = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 71  IQAHKGVMGVVIVNHEGIPIKSSLDNATSV 160
           I  HK +MG+++ N EG+ I   ++ AT +
Sbjct: 219 ITMHK-MMGLLMTNAEGVGIVKLVNAATQI 247



 Score = 23.0 bits (47), Expect(2) = 6.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 173 LIGQLTEKARNVVREMDSTNELTFLRVRSRRHE 271
           ++ + TEKAR  V  +   N+L  ++   R+H+
Sbjct: 285 IVAKETEKARKQVTVLMEKNKLRQVKALVRKHD 317


>At5g29000.2 68418.m03590 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 413

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 94  HHPFVGLDPLDRFFDLGGH 38
           HHP   +DPL  FFD   H
Sbjct: 112 HHPQEFIDPLHEFFDFSDH 130


>At5g29000.1 68418.m03589 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 370

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 94  HHPFVGLDPLDRFFDLGGH 38
           HHP   +DPL  FFD   H
Sbjct: 69  HHPQEFIDPLHEFFDFSDH 87


>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
           chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 746

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  EVEETIKRIQAHKGVMGVVIVNHEGIPIK 133
           E E+T+    AHKG+  V+   H+ I IK
Sbjct: 204 ETEQTLLESLAHKGLEAVLDTEHDAIRIK 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,229
Number of Sequences: 28952
Number of extensions: 281007
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)