Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n06
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.53 
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   4.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   6.5  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   6.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.6  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 336 LRESHQYYRAVVRMHLVLL 392
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 423 QSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQ 536
           Q AH+N+    +SD+DNS    V+   +G+   +S+ +
Sbjct: 47  QCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVK 84


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 477 IENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELT 587
           +EN ++ K+    K ++ITQ P   Y   P +T+ELT
Sbjct: 268 LENCLECKTA---KVVNITQKPKTKYKPLPLSTVELT 301


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 193 LFVTNLNGGQLHAFKKLEHKFEIRMHVCDPDRSI 92
           L++ +   G LH+   +E+KF +  + C P  SI
Sbjct: 793 LYINSPQCGTLHS--GVEYKFNVSAYACQPSTSI 824


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 408 LLGSCQSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIE 581
           +L  CQ      H   L+DI  SI    +   DG   Y+S   G +  +    G  IE
Sbjct: 549 MLTYCQDGISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNGYVLMFNFQNGQVIE 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,537
Number of Sequences: 5004
Number of extensions: 46077
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)