Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n06
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21605| Best HMM Match : DUF1043 (HMM E-Value=2)                     30   1.7  
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)                   29   2.9  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                         28   6.7  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              27   8.9  
SB_20377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_21605| Best HMM Match : DUF1043 (HMM E-Value=2)
          Length = 352

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/94 (27%), Positives = 40/94 (42%)
 Frame = -3

Query: 491 HTILNTVIDVRKQLNVFIQMGGLARAQQRRDGE*QN*MHSDYCSIILMRFSKKEF*SAFR 312
           H +    + + +Q++V   M  +A+ Q  R     N +  DY  I L R         F 
Sbjct: 225 HELYQDAVTIARQVDVQPDMPRVAQRQTHRPNAPPN-LLQDYYKINLTR--------VFL 275

Query: 311 *RNLAGYDIYRKDFT*VCKKITLPNNETNLSLMK 210
              L   D   KD   VC K+  P  +TN++L+K
Sbjct: 276 DHVLEQLDSRFKDDVFVCYKVKCPQRKTNVALLK 309


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 441 KHIKLLSDIDNSIENGV-QAKSDGSHKYLS 527
           +H+KL+S++ NS+ N + +AK  G HK ++
Sbjct: 319 EHLKLMSELGNSLINSIYEAKIAGDHKKIN 348


>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
          Length = 829

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 435 LNKHIKLLSDIDNSIENG--VQAKSDGSHK-YLSITQGPLPSY 554
           L+KH +LLSD+  ++++G  V    D  H+ Y   T+GP   Y
Sbjct: 645 LDKHQELLSDLQQAVDDGKLVSFTVDSKHRLYNYNTKGPTGGY 687


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = +3

Query: 276  FTVNIVAGEISSPEGALEFFLRESHQYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKL 455
            +T+ +V GE     G  EFF          V  +       V A         ++  +KL
Sbjct: 2191 WTMEVVPGEELKWLGENEFFDTPQQTQGETVTTLFKFPPKPVPANATPLDPPPVSPLLKL 2250

Query: 456  LSDIDNSIENGVQAKSDGSHKYLSITQ 536
             S ID  +E GV+ +++   K L ITQ
Sbjct: 2251 SSAIDARLELGVEMEAESDLKTLQITQ 2277


>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 441 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELTCEAAGS 605
           +HI LL +I N   + ++ K +  H  L I     PSY H       L  +A GS
Sbjct: 344 EHIPLLKNILNKGRDAIRTKYNVPHSQLRIYVHYQPSYYHFHVHFTHLKFDAPGS 398


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 114 TCIRISNLCSNFLKACSCPPFKFVTKRI 197
           TC+ I  +  +  +ACS PPF  +TK++
Sbjct: 524 TCLSIDTILHDQARACSSPPFS-MTKQV 550


>SB_20377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 445 TLSCFRTSITVLRMVCKQNLMDLINIYRSRKAPYR--RTHILPEP 573
           T SC  +++ V + V   +L DL +I ++   PYR    H++ +P
Sbjct: 41  TCSCRHSNLVVAQSVFVNSLSDLTSISQNSVKPYRLKLVHVVRDP 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,068,291
Number of Sequences: 59808
Number of extensions: 356091
Number of successful extensions: 889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)